View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_high_29 (Length: 230)

Name: NF3709_high_29
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_high_29
NF3709_high_29
[»] chr3 (4 HSPs)
chr3 (22-230)||(35243718-35243926)
chr3 (1-101)||(35244172-35244274)
chr3 (22-101)||(27972620-27972701)
chr3 (2-64)||(41874519-41874581)
[»] chr2 (6 HSPs)
chr2 (1-101)||(41602457-41602559)
chr2 (1-102)||(25306812-25306915)
chr2 (1-82)||(25302817-25302898)
chr2 (1-64)||(17308695-17308758)
chr2 (1-64)||(1015729-1015792)
chr2 (1-63)||(33187213-33187275)
[»] chr8 (3 HSPs)
chr8 (1-101)||(44687156-44687258)
chr8 (1-64)||(1173516-1173579)
chr8 (1-64)||(30634268-30634331)
[»] chr1 (3 HSPs)
chr1 (1-108)||(33773208-33773317)
chr1 (1-64)||(44782222-44782285)
chr1 (1-64)||(46679710-46679773)
[»] chr4 (1 HSPs)
chr4 (1-101)||(8005911-8006013)
[»] chr7 (2 HSPs)
chr7 (1-95)||(30511164-30511260)
chr7 (1-64)||(29924638-29924701)
[»] chr5 (4 HSPs)
chr5 (1-64)||(8081510-8081573)
chr5 (1-64)||(25725847-25725910)
chr5 (1-64)||(25502064-25502127)
chr5 (1-64)||(40382796-40382859)
[»] chr6 (1 HSPs)
chr6 (1-44)||(34350393-34350436)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 35243926 - 35243718
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactccatcctctgattcgtaataacaagcactcacgcacacat 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35243926 gtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactccatcctctgattcataataacaagcactcacgcacacat 35243827  T
Q  122 atcaacactgtttgaaaaaatacattaaccttttggcgtgaaattattttgtgcttcccttctaagcaaactcttggtccaaagagataggaagtcacaa 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  35243826 atcaacactgtttgaaaaaatacattaaccttttggcatgaaattattttgtgccttccatctaagcaaactcttggtccaaagagataggaagtcacaa 35243727  T
Q  222 aattcctgg 230  Q
    |||||||||    
T  35243726 aattcctgg 35243718  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35244172 - 35244274
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  35244172 cttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 35244271  T
Q  99 ata 101  Q
    |||    
T  35244272 ata 35244274  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 27972620 - 27972701
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgtaata 101  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||   |||||||||||| |||||    
T  27972620 gtgatgactcctaaagatcattatgcattctatcttttcattgtatgggaccttgatattcggtatcctctgattcataata 27972701  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41874519 - 41874581
Alignment:
Q  2 ttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||| || ||||||||||||||| ||||   | |||||||||||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattg 41874581  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41602457 - 41602559
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 41602556  T
Q  99 ata 101  Q
    |||    
T  41602557 ata 41602559  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 25306812 - 25306915
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||    
T  25306812 cttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctaattcata 25306911  T
Q  99 ataa 102  Q
    ||||    
T  25306912 ataa 25306915  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25302817 - 25302898
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25302817 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattatatgggaccttgatactc 25302898  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17308695 - 17308758
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||| | ||||  || |||||||||||||||    
T  17308695 cttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattg 17308758  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1015729 - 1015792
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || | |||||| |||||| ||||  || |||||||||||||||    
T  1015729 cttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattg 1015792  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33187275 - 33187213
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 63  Q
    |||||||||||||||||||| || ||||||| ||||||  ||||  || ||||||||||||||    
T  33187275 cttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccatt 33187213  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44687156 - 44687258
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  44687156 cttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 44687255  T
Q  99 ata 101  Q
    |||    
T  44687256 ata 44687258  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1173516 - 1173579
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| || ||||| ||| |||||    
T  1173516 cttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattg 1173579  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30634331 - 30634268
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||   | |||||||||||||||    
T  30634331 cttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattg 30634268  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33773208 - 33773317
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| |||| ||    
T  33773208 cttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccatcgtatgggaccttgatactcgacatcctctaattcata 33773307  T
Q  99 ataacaagca 108  Q
    ||||||||||    
T  33773308 ataacaagca 33773317  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44782285 - 44782222
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  44782285 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 44782222  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46679710 - 46679773
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  46679710 cttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 46679773  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8005911 - 8006013
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||    
T  8005911 cttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgacactcggcatcctctgattcata 8006010  T
Q  99 ata 101  Q
    |||    
T  8006011 ata 8006013  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30511164 - 30511260
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattc 95  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||    
T  30511164 cttttatacaattgtttcttactgataactcctagagaacattatgcattctatcttttcattgtataggaccttgatactcggcatcctctgattc 30511260  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29924638 - 29924701
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||| |||||||| ||||| ||||||||||||||| ||||  || |||||||||||||||    
T  29924638 cttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattg 29924701  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8081510 - 8081573
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  8081510 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 8081573  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25725910 - 25725847
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||| |||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  25725910 cttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 25725847  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25502127 - 25502064
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||  || ||||| |||||||||    
T  25502127 cttttatacaattgtttcttgataatgactcctagagagaattacacaatctatatttccattg 25502064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40382859 - 40382796
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||| ||||||||||||||||| |||| |||||||||| ||||  || | |||||||||||||    
T  40382859 cttttttacaattgtttcttagtaatgattcctagagagaattacacaatttatctttccattg 40382796  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34350436 - 34350393
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcatta 44  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||    
T  34350436 cttttatacaattgtttcttagtaatgactcctaaagagaatta 34350393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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