View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_high_3 (Length: 664)

Name: NF3709_high_3
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_high_3
NF3709_high_3
[»] chr1 (1 HSPs)
chr1 (1-643)||(49133128-49133770)


Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Complemental strand, 49133770 - 49133128
Alignment:
Q  1 ctatccgccaaagcctcgcccaataccacccttggtcggagcttgtttacctctccaccttctccaatcgttcttagaagcaatgcttcacacatccaca 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |    
T  49133770 ctatctgccaaagcctcgcccaatgccacccttggtcggagcttgtttaccgctccaccttctcaaatcgttcttagaagcaatgcttcacacatccata 49133671  T
Q  101 ataacttctcatagtcttgctgcaagtactatcaatcgactgatcaaaataacctatattgattgagcaatgtatatatgcatctttaatttttgtggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133670 ataacttctcatagtcttgctgcaagtactatcaatcgactgatcaaaataacctatattgattgagcaatgtatatatgcatctttaatttttgtggtg 49133571  T
Q  201 gaagtatcaacgcatctttctatatacaagtggtactactgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133570 gaagtatcaacgcatctttctatatacaagtggtactactgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccc 49133471  T
Q  301 catgaactnnnnnnnnnttataaccttcacatgcaaaaggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaag 400  Q
    ||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133470 catgaactaaaaaaaaattataaccttcacatgcaaaaggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaag 49133371  T
Q  401 atcagtttccataatcaataatactgttgacacataacgtcagacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagaca 500  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133370 atcagtttccataatcaataatactgttgacacataacgtcacacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagaca 49133271  T
Q  501 cacagctaaatctggtgaagaacaatgataaaatgttacagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133270 cacagctaaatctggtgaagaacaatgataaaatgttacagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccat 49133171  T
Q  601 caacattctcaggcatgcctcttccttcatgatgaccaccatc 643  Q
    ||| |||||||||||||||| ||||||||||||||||||||||    
T  49133170 caatattctcaggcatgccttttccttcatgatgaccaccatc 49133128  T

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