View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3709_high_30 (Length: 227)
Name: NF3709_high_30
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_30 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 31041210 - 31040994
Alignment:
| Q |
7 |
gtttcttcctcatatattcataccttgtgtggtggcaagagtaaggcatatatattcctttgaccttcaattaaatgaaataaactatagtacatagcaa |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
31041210 |
gtttcttcctcgtatattcataccttgtgt------aagaggaaggcatatatattcctttgacctttaattaaatgaaataaacta--gtacgtagcaa |
31041119 |
T |
|
| Q |
107 |
aaatgattgatacacatggataccaaattcaattcctact----nnnnnnntcaaataaaacatgacgtgtgaaacaagaaatgttcctgtggatgctta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041118 |
aaatgattgatacacatggataccaaattcaattcctactaaaaaaaaaatacaaataaaacatgacgtgtgaaacaagaaatgttcctgtggatgctta |
31041019 |
T |
|
| Q |
203 |
tttaagagctatgaatatgctccat |
227 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31041018 |
tttaagagctatgaatatgctccat |
31040994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 31076228 - 31076174
Alignment:
| Q |
168 |
acgtgtgaaacaagaaatgttcctgtggatgcttatttaagagctatgaatatgc |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
31076228 |
acgtgtgaaacaagagttgttcctgtggatgcttatttaagagatgtgaatatgc |
31076174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University