View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_high_32 (Length: 223)
Name: NF3709_high_32
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_32 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 37215906 - 37215690
Alignment:
| Q |
7 |
attgcatacctgaagatgatgaaatttatcactatcaagataccaaaaatatattaacattattcaccaaaacttgatctcaaaataaactatgagaaat |
106 |
Q |
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| T |
37215906 |
attgcatacctgaagatgatgaaatttatcactatcaaaatagaaaaaatatattaacattattcaccataacttgatctcaaaataaactatgagaaat |
37215807 |
T |
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| Q |
107 |
gtaaaagtaaaaggtatactctggagcatgatagccaaatgttcccaagactcttgttgaatgtagccgagctgccgtatcagaagactgatttgtcaag |
206 |
Q |
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| T |
37215806 |
gtaaaagtaaaaggtatactctggagcatgatagccaaatgttcccaagactcttgttgaatgtagccgagctgccgtatcagaagactgatttgtcaag |
37215707 |
T |
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| Q |
207 |
ctgaaatcagaaatctt |
223 |
Q |
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|||||||||| |||||| |
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| T |
37215706 |
ctgaaatcagcaatctt |
37215690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 23409053 - 23408951
Alignment:
| Q |
121 |
tatactctggagcatgatagccaaatgttcccaagactcttgttgaatgtagccgagctgccgtatcagaagactgatttgtcaagctgaaatcagaaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | ||| |
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| T |
23409053 |
tatactctggagcatgatagccaaatgttcccaagactcttgttgaatgtagtcgagctgccgagtcagaagactgatttgtcaagttgaaatctgcaat |
23408954 |
T |
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| Q |
221 |
ctt |
223 |
Q |
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||| |
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| T |
23408953 |
ctt |
23408951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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