View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_high_4 (Length: 400)
Name: NF3709_high_4
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 132 - 390
Target Start/End: Original strand, 40235579 - 40235836
Alignment:
| Q |
132 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
231 |
Q |
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| T |
40235579 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
40235678 |
T |
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| Q |
232 |
tgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagctcgcgaccaatagaacgtgct |
331 |
Q |
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| T |
40235679 |
tgtctgaaaa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgct |
40235777 |
T |
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| Q |
332 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
390 |
Q |
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| T |
40235778 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
40235836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 140 - 390
Target Start/End: Complemental strand, 17461042 - 17460793
Alignment:
| Q |
140 |
tattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctgaa |
239 |
Q |
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| T |
17461042 |
tattagtattttcctcctcgtccattaccttcatcttttgacacattgatgatagttcaaggattttgaacttgaatacattgttttcaatatgcgtgaa |
17460943 |
T |
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| Q |
240 |
aaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagctcgcgaccaatagaacgtgctttgacatg |
339 |
Q |
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| T |
17460942 |
aa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagtttgttgccaatagaacacactttgacatg |
17460844 |
T |
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| Q |
340 |
ccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
390 |
Q |
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| T |
17460843 |
ccaatcacttcctctatgatctcttaggataaaatccttcaatagcctttg |
17460793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 133 - 374
Target Start/End: Complemental strand, 17454832 - 17454592
Alignment:
| Q |
133 |
tccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatat |
232 |
Q |
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| T |
17454832 |
tccatcatattattattttcctcatcttccatcaccggcatcttttcacacattgatgatagttcaagaattttgaatttgaatacattgttttcaatat |
17454733 |
T |
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| Q |
233 |
gtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagctcgcgaccaatagaacgtgctt |
332 |
Q |
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| T |
17454732 |
gagt-aaaaacaaggaagtcattctccactaaacaattttcttgtctaaatttcttccagccatcatcaaaatagaactcgtcaccaatacgacgcgctt |
17454634 |
T |
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| Q |
333 |
tgacatgccaatctgttcctctatgatcccttaggataaaat |
374 |
Q |
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| T |
17454633 |
tgacataccaatctcttcttctacgatctcttaggataaaat |
17454592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 138 - 374
Target Start/End: Original strand, 17394002 - 17394237
Alignment:
| Q |
138 |
catattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctg |
237 |
Q |
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|||||| |||||||||||| | | |||||||| |||||| |||||| |||||||||||| |||||||||| ||||||| | |||||||||||| | |
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| T |
17394002 |
catattgttattttcctccacgacacttaccttcttcttttcacacatcgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgt- |
17394100 |
T |
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| Q |
238 |
aaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagctcgcgaccaatagaacgtgctttgaca |
337 |
Q |
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|||||||||||| |||| |||| |||||||||||| ||||| ||| | ||||| ||| | |||||||||||||| |||||| ||| ||||||||| |
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| T |
17394101 |
aaaaacaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccaccgtcaaaataaagctcatcgccaataagacgagctttgaca |
17394200 |
T |
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| Q |
338 |
tgccaatctgttcctctatgatcccttaggataaaat |
374 |
Q |
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||||||||| |||||||| |||| ||||||||||||| |
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| T |
17394201 |
tgccaatctcttcctctacgatctcttaggataaaat |
17394237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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