View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_high_6 (Length: 395)
Name: NF3709_high_6
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 37 - 377
Target Start/End: Original strand, 51661505 - 51661833
Alignment:
| Q |
37 |
ataaaaagagtgttattgtgaacccgcatatgaaagaggaatgctggggtcacacc-tctaacactcttctataacacacgccaatcataaatagtcaca |
135 |
Q |
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| T |
51661505 |
ataaaaagagtgttattgtgaaccctcatgtataagaggaatgctagggtcacaccctctaacactctcctataacacactccaatcataaatagtcaca |
51661604 |
T |
|
| Q |
136 |
tcatctattgttttttagcaatgctagtgtcaaacgctttaacacactccattgttcacactctctctaattgttccacatcatccatatcttgaatcat |
235 |
Q |
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| T |
51661605 |
tcatctattgtttttgaacaatgctagtgtcaaacgctttaacacactc--------------tctttaattggtccacatcatccatatcttgaatcat |
51661690 |
T |
|
| Q |
236 |
ttt-ttggcctaccgcttcttcaggttactgcatcttttatttactttttcttttggtcttctaccaagaccagcatagggaagcaattgatctatctcc |
334 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51661691 |
ttttttggcctaccgcttcttaaggttactgcatcttttatttactttttcttttggtcttctaccaagaccagcatagggaagcaattgatctatctcc |
51661790 |
T |
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| Q |
335 |
ccagttcaaaccaccaggaccatcccttcatccacccttaatc |
377 |
Q |
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| T |
51661791 |
ccagttcaaaccaccaggaccatcccttcatccacccttaatc |
51661833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 51662377 - 51662304
Alignment:
| Q |
152 |
agcaatgctagtgtcaaacgctttaacacactccattgttcacactctctctaattgttccacatcatccatat |
225 |
Q |
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| T |
51662377 |
agcaatgttagcgtcaaacgctttgacacactccattggtcacactctctctaattggtccacgtcatccatat |
51662304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 154 - 373
Target Start/End: Original strand, 44976017 - 44976244
Alignment:
| Q |
154 |
caatgctagtgtcaaacgctttaacacactccattgttcacactctctctaattgttccacatcatccatatcttgaatcattttttggcctaccgcttc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
44976017 |
caatgctagtgtcaaacgctttaacacactccattgatcacactctctctaattggtccacatcatctatatcttgaatcattttttggcccaccgcttc |
44976116 |
T |
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| Q |
254 |
ttcaggttactgcatcttttatttactttttcttttggtcttctacc--------aagaccagcatagggaagcaattgatctatctccccagttcaaac |
345 |
Q |
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| T |
44976117 |
ttcaggttactgcatcttttatttactttttcttttggtcttctaccaagactagaagaccagcatagggaagcaattgatctatctccccagttcaaac |
44976216 |
T |
|
| Q |
346 |
caccaggaccatcccttcatccaccctt |
373 |
Q |
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| T |
44976217 |
caccaggaccatcccttcatccaccctt |
44976244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 44976803 - 44976741
Alignment:
| Q |
164 |
gtcaaacgctttaacacactcca-ttgttcacactctctctaattgttccacatcatccatat |
225 |
Q |
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|||||||||||| |||||||||| ||| |||||||||||||||||| ||||| |||| ||||| |
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| T |
44976803 |
gtcaaacgctttgacacactccaattggtcacactctctctaattggtccacgtcattcatat |
44976741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 32057264 - 32057219
Alignment:
| Q |
105 |
ctataacacacgccaatcataaatagtcacatcatctattgttttt |
150 |
Q |
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| T |
32057264 |
ctataacacactccaatcataaatagacacatcatttattgttttt |
32057219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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