View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_low_10 (Length: 362)

Name: NF3709_low_10
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_low_10
NF3709_low_10
[»] chr3 (5 HSPs)
chr3 (1-355)||(35244172-35244539)
chr3 (22-103)||(35243847-35243926)
chr3 (22-104)||(27972620-27972702)
chr3 (2-64)||(41874519-41874581)
chr3 (137-213)||(35242275-35242350)
[»] chr2 (6 HSPs)
chr2 (1-103)||(41602457-41602559)
chr2 (1-100)||(25302817-25302916)
chr2 (1-103)||(25306812-25306914)
chr2 (1-64)||(17308695-17308758)
chr2 (1-64)||(1015729-1015792)
chr2 (1-63)||(33187213-33187275)
[»] chr8 (3 HSPs)
chr8 (1-103)||(44687156-44687258)
chr8 (1-64)||(1173516-1173579)
chr8 (1-64)||(30634268-30634331)
[»] chr4 (1 HSPs)
chr4 (1-105)||(8005911-8006015)
[»] chr1 (3 HSPs)
chr1 (1-103)||(33773208-33773310)
chr1 (1-64)||(44782222-44782285)
chr1 (1-64)||(46679710-46679773)
[»] chr7 (2 HSPs)
chr7 (1-101)||(30511164-30511264)
chr7 (1-64)||(29924638-29924701)
[»] chr5 (4 HSPs)
chr5 (1-64)||(8081510-8081573)
chr5 (1-64)||(25725847-25725910)
chr5 (1-64)||(25502064-25502127)
chr5 (1-64)||(40382796-40382859)
[»] chr6 (1 HSPs)
chr6 (1-44)||(34350393-34350436)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 35244172 - 35244539
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244172 cttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 35244271  T
Q  101 atacttgtaaagatagattgagtaccaaagtctct-------------atgatcataatgtatgcacaagaatacatgacaatataaaaataataagttt 187  Q
    |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244272 atacttgtaaagatagattgagtaccaaagtctcttagattgtgtcatatgatcataatgtatgcacaagaatacatgacaatataaaaataataagttt 35244371  T
Q  188 ttcagacattacttggtaggttgtctcgttcggatgttgggaagttactttttctaaaggatccagtcgctgcactattgtaattgagcgtgctgcaaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244372 ttcagacattacttggtaggttgtctcgttcggatgttgggaagttactttttctaaaggatccagtcgctgcactattgtaattgagcgtgctgcaaaa 35244471  T
Q  288 tctgcaagtaatttatatcaaccgagtaatatgcagaaagagtgcaccaaggtatttatgttcatctc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244472 tctgcaagtaatttatatcaaccgagtaatatgcagaaagagtgcaccaaggtatttatgttcatctc 35244539  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 35243926 - 35243847
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcataata 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35243926 gtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcataata 35243847  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 27972620 - 27972702
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcataatac 104  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||    
T  27972620 gtgatgactcctaaagatcattatgcattctatcttttcattgtatgggaccttgatattcggtatcctctgattcataatac 27972702  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41874519 - 41874581
Alignment:
Q  2 ttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||| || ||||||||||||||| ||||   | |||||||||||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattg 41874581  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 35242275 - 35242350
Alignment:
Q  137 tgatcataatgtatgcacaagaatacatgacaatataaaaataataagtttttcagacattacttggtaggttgtct 213  Q
    |||| |||||||||| |||  ||||||||| | ||||||| ||||||| ||||||| ||| ||| ||||||||||||    
T  35242275 tgataataatgtatggacacaaatacatgagagtataaaattaataag-ttttcaggcataactcggtaggttgtct 35242350  T

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Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41602457 - 41602559
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 41602556  T
Q  101 ata 103  Q
    |||    
T  41602557 ata 41602559  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25302817 - 25302916
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  25302817 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattatatgggaccttgatactcgacatcctctaattcata 25302916  T

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Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25306812 - 25306914
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25306812 cttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctaattcata 25306911  T
Q  101 ata 103  Q
    |||    
T  25306912 ata 25306914  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17308695 - 17308758
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||| | ||||  || |||||||||||||||    
T  17308695 cttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattg 17308758  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1015729 - 1015792
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || | |||||| |||||| ||||  || |||||||||||||||    
T  1015729 cttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattg 1015792  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33187275 - 33187213
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 63  Q
    |||||||||||||||||||| || ||||||| ||||||  ||||  || ||||||||||||||    
T  33187275 cttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccatt 33187213  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44687156 - 44687258
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44687156 cttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 44687255  T
Q  101 ata 103  Q
    |||    
T  44687256 ata 44687258  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1173516 - 1173579
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| || ||||| ||| |||||    
T  1173516 cttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattg 1173579  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30634331 - 30634268
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||   | |||||||||||||||    
T  30634331 cttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattg 30634268  T

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Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8005911 - 8006015
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  8005911 cttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgacactcggcatcctctgattcata 8006010  T
Q  101 atact 105  Q
    |||||    
T  8006011 atact 8006015  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33773208 - 33773310
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  33773208 cttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccatcgtatgggaccttgatactcgacatcctctaattcata 33773307  T
Q  101 ata 103  Q
    |||    
T  33773308 ata 33773310  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44782285 - 44782222
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  44782285 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 44782222  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46679710 - 46679773
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  46679710 cttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 46679773  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30511164 - 30511264
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 100  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  30511164 cttttatacaattgtttcttactgataactcctagagaacattatgcattctatcttttcattgtataggaccttgatactcggcatcctctgattcata 30511263  T
Q  101 a 101  Q
    |    
T  30511264 a 30511264  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29924638 - 29924701
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||| |||||||| ||||| ||||||||||||||| ||||  || |||||||||||||||    
T  29924638 cttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattg 29924701  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8081510 - 8081573
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  8081510 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 8081573  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25725910 - 25725847
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||| |||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  25725910 cttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 25725847  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25502127 - 25502064
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||  || ||||| |||||||||    
T  25502127 cttttatacaattgtttcttgataatgactcctagagagaattacacaatctatatttccattg 25502064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40382859 - 40382796
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||| ||||||||||||||||| |||| |||||||||| ||||  || | |||||||||||||    
T  40382859 cttttttacaattgtttcttagtaatgattcctagagagaattacacaatttatctttccattg 40382796  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34350436 - 34350393
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcatta 44  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||    
T  34350436 cttttatacaattgtttcttagtaatgactcctaaagagaatta 34350393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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