View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_low_13 (Length: 311)

Name: NF3709_low_13
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_low_13
NF3709_low_13
[»] chr6 (9 HSPs)
chr6 (24-301)||(16273265-16273542)
chr6 (24-299)||(28321239-28321514)
chr6 (24-301)||(22824573-22824851)
chr6 (29-231)||(16274712-16274916)
chr6 (29-231)||(22825783-22825987)
chr6 (29-231)||(28319871-28320076)
chr6 (236-281)||(16274500-16274545)
chr6 (236-281)||(28320242-28320287)
chr6 (236-281)||(22825571-22825616)
[»] chr1 (3 HSPs)
chr1 (24-301)||(29995926-29996203)
chr1 (29-231)||(29997373-29997577)
chr1 (236-281)||(29997161-29997206)
[»] scaffold0038 (3 HSPs)
scaffold0038 (24-301)||(112348-112625)
scaffold0038 (29-231)||(110977-111182)
scaffold0038 (236-281)||(111348-111393)
[»] chr2 (7 HSPs)
chr2 (24-301)||(19046850-19047127)
chr2 (25-301)||(39832986-39833263)
chr2 (24-295)||(26239808-26240079)
chr2 (29-231)||(19045479-19045683)
chr2 (29-230)||(39834721-39834924)
chr2 (236-281)||(19045850-19045895)
chr2 (236-281)||(39834508-39834553)
[»] chr3 (9 HSPs)
chr3 (24-301)||(32967997-32968274)
chr3 (24-301)||(10024286-10024563)
chr3 (24-301)||(42394549-42394826)
chr3 (29-231)||(42396012-42396216)
chr3 (29-199)||(32969797-32969968)
chr3 (29-239)||(10023087-10023299)
chr3 (236-281)||(42395800-42395845)
chr3 (236-281)||(10023458-10023503)
chr3 (236-281)||(32969546-32969591)
[»] scaffold0061 (1 HSPs)
scaffold0061 (24-301)||(40799-41076)
[»] scaffold0017 (1 HSPs)
scaffold0017 (24-301)||(157709-157986)
[»] chr8 (1 HSPs)
chr8 (87-301)||(31973170-31973384)
[»] chr5 (1 HSPs)
chr5 (97-154)||(7968153-7968211)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 16273542 - 16273265
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16273542 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 16273443  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16273442 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 16273343  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
16273342 cttatacgacatgtttgctaaaaataataagagtaacctttacacttgttccatattattagacaccccttacctttg 16273265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 299
Target Start/End: Original strand, 28321239 - 28321514
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28321239 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 28321338  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28321339 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 28321438  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctt 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
28321439 cttatacgacatgtttgctaaaaataataagagtaacctttacacttgttccatattattagacaccccttacctt 28321514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 22824851 - 22824573
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
22824851 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcagtcatgtttgtgactttgaatgtggttaag 22824752  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataa-ttattcaaatccaatagaattttaggagtcaatttttactctta 222  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
22824751 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataatttattcaaatccaatagaattttaggagtcaatttttactctta 22824652  T
223 acttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22824651 acttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 22824573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 16274916 - 16274712
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
16274916 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 16274817  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtcaatttttactcttaactt 226  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || ||||||||||||| |||    
16274816 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 16274717  T
227 atacg 231  Q
    |||||    
16274716 atacg 16274712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 22825987 - 22825783
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
22825987 taatgtaacaatatttattttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 22825888  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtcaatttttactcttaactt 226  Q
    |||||||||||||||||||||| |||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || ||||||||||||| |||    
22825887 aatcaaatgtttgaattgatcttaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 22825788  T
227 atacg 231  Q
    |||||    
22825787 atacg 22825783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 28319871 - 28320076
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  ||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
28319871 taatgtaacaatgtttattttgaatattaatgtagaaagttttatagtatcagctcatcacaattaatcatgtttgtgactttgaatatggttaagataa 28319970  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtc-aatttttactcttaact 225  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || | |||||||||||| ||    
28319971 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctattttttactcttagct 28320070  T
226 tatacg 231  Q
    ||||||    
28320071 tatacg 28320076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 16274545 - 16274500
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
16274545 gtttgctaaaaataataagagtcaactttacacttgttccatatta 16274500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 28320242 - 28320287
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
28320242 gtttgctaaatataataagagtcaactttacacttgttccatatta 28320287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 22825616 - 22825571
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||    
22825616 gtttgataaaaataataagagtcaactttacacttgtttcatatta 22825571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 29996203 - 29995926
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29996203 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 29996104  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29996103 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 29996004  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
29996003 cttatacgacatgtttgctaaaaataataagagtaacctttacacttgttccatattattagacaccccttacctttg 29995926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 29997577 - 29997373
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
29997577 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 29997478  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtcaatttttactcttaactt 226  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || ||||||||||||| |||    
29997477 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 29997378  T
227 atacg 231  Q
    |||||    
29997377 atacg 29997373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 29997206 - 29997161
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
29997206 gtttgctaaaaataataagagtcaactttacacttgttccatatta 29997161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 112348 - 112625
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
112348 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 112447  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
112448 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 112547  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
112548 cttatacgacatgtttgctaaaaataataagagtaacttttacacttgttccatattattagacaccccttacctttg 112625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 110977 - 111182
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  ||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
110977 taatgtaacaatgtttattttgaatattaatgtagaaagttttatagtatcagctcatcacaattaatcatgtttgtgactttgaatatggttaagataa 111076  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtc-aatttttactcttaact 225  Q
    |||||||||||||||||||||| |||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || | |||||||||||| ||    
111077 aatcaaatgtttgaattgatcttaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctattttttactcttagct 111176  T
226 tatacg 231  Q
    ||||||    
111177 tatacg 111182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 111348 - 111393
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
111348 gtttgctaaatataataagagtcaactttacacttgttccatatta 111393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 19046850 - 19047127
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19046850 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 19046949  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19046950 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 19047049  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
19047050 cttatacgacatgtttgctaaaaataataagagtaacttttacacttgttccatattattagacaccccttacctttg 19047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 39833263 - 39832986
Alignment:
25 catataatgtaaacatgtttatttt-gaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39833263 catataatgtaaacatgtttatttttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 39833164  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39833163 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 39833064  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
39833063 cttatacgacatgtttgctaaaaataataagagtaacctttacacttgttccatattattagacaccccttacctttg 39832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 26239808 - 26240079
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
26239808 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttataggatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaat 26239907  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    || |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
26239908 attaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttacttttaa 26240007  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacacccctta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
26240008 cttatacgacatgtttgctaaaaataataagagtcacctttacacttattccatattattagacacccctta 26240079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 19045479 - 19045683
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
19045479 taatgtaacaatgtttattttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 19045578  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattt-taggagtcaatttttactcttaactt 226  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| |||    
19045579 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatttataggactctatttttactcttagctt 19045678  T
227 atacg 231  Q
    |||||    
19045679 atacg 19045683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 39834924 - 39834721
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
39834924 taatgtaacaatgtttattttgaatgttggtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 39834825  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattt-taggagtcaatttttactcttaactt 226  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||| ||||| |  ||||||||||||| |||    
39834824 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatttataggactatatttttactcttagctt 39834725  T
227 atac 230  Q
    ||||    
39834724 atac 39834721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 19045850 - 19045895
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
19045850 gtttgctaaaaataataagagtcaactttacacttgttccatatta 19045895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 39834553 - 39834508
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
39834553 gtttgctaaaaataataagagtcaactttacacttgttccatatta 39834508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 32968274 - 32967997
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
32968274 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttattgtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttgag 32968175  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
32968174 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatctaatagaattttaggagtcaatttttactcttaa 32968075  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32968074 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 32967997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 10024286 - 10024563
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10024286 gcatataatgtaaacatgtttattttgaatgttaatgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 10024385  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    || |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10024386 atgaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 10024485  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
10024486 cttatacgacatgtttgttaaaaatagtaagagtcacctttacacttgttccatattattagacaccccttacctttg 10024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 42394826 - 42394549
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
42394826 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatctttgtgactttgaatgtgattaag 42394727  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 223  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42394726 ataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaa 42394627  T
224 cttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
42394626 cttatacgacatgtttgctaaaaataataagagtaacttttacacttgttccatattattagacaccccttacctttg 42394549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 42396216 - 42396012
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
42396216 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 42396117  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtcaatttttactcttaactt 226  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || ||||||||||||| |||    
42396116 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 42396017  T
227 atacg 231  Q
    |||||    
42396016 atacg 42396012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 32969968 - 32969797
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
32969968 taatgtaacaatgtttattttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 32969869  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt 199  Q
    ||||||||||||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||    
32969868 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatt 32969797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 10023087 - 10023299
Alignment:
29 taatgtaaacatgtttattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 127  Q
    ||||||||  ||||||||||| |||||||| ||||||  ||||||||||||||||||||| ||| ||| |||||||||||||||| | ||||||||||||    
10023087 taatgtaacaatgtttatttttaatgttagagtagaaggttttatagtatcagctcatcacaattaattatgtttgtgactttgactatggttaagataa 10023186  T
128 aatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaaatccaatagaatt-ttaggagtcaatttttactcttaactt 226  Q
    ||||||||| ||||||||||||||||| |||  || ||| ||| |||||||||| |||||||||||||||||  ||||| || ||||||||||||| |||    
10023187 aatcaaatgcttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 10023286  T
227 atacgacatgttt 239  Q
    ||||| |||||||    
10023287 atacgtcatgttt 10023299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 42395845 - 42395800
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
42395845 gtttgctaaaaataataagagtcaactttacacttgttccatatta 42395800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 10023458 - 10023503
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
10023458 gtttgctaaaaataataagagtcaactttacacttgttctatatta 10023503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 32969591 - 32969546
Alignment:
236 gtttgctaaaaataataagagtcacctttacacttgttccatatta 281  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||    
32969591 gtttgcaaaaaataataagagtcaactttacacttcttccatatta 32969546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 40799 - 41076
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
40799 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcaactcatcaaaatgaatcatgtttgtgactttgaatgtggttaag 40898  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttatta-ttgaaaatataattattcaaatccaatagaattttaggagtcaatttttactctta 222  Q
    ||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
40899 ataaaatcaaatgtttgaattgatctaaaagttgtgattattatttgaaaatataattattcaaatccaatagaattttaggagtcgattttgactctta 40998  T
223 acttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
40999 acttatacgacatgtttgct-aaaataataagagtcacctttacacttgttccatattattagaaaccccttacctttg 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 157986 - 157709
Alignment:
24 gcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaag 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
157986 gcatataatttaaacatgtttattttgaatgttagtgtagaaattttatagtatcaactcatcaaaatgaatcatgtttgtgactttgaatgtggttaag 157887  T
124 ataaaatcaaatgtttgaattgatctaaaagctgtatttatta-ttgaaaatataattattcaaatccaatagaattttaggagtcaatttttactctta 222  Q
    ||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
157886 ataaaatcaaatgtttgaattgatctaaaagttgtgattattatttgaaaatataattattcaaatccaatagaattttaggagtcgattttgactctta 157787  T
223 acttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattagacaccccttacctttg 301  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
157786 acttatacgacatgtttgct-aaaataataagagtcacctttacacttgttccatattattagaaaccccttacctttg 157709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 87 - 301
Target Start/End: Complemental strand, 31973384 - 31973170
Alignment:
87 aaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagctgtatttattattgaaaatataattattcaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||    
31973384 aaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaa 31973285  T
187 atccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagtcacctttacacttgttccatattattaga 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
31973284 atccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataattagagtcacctttacacttgttccatattattaga 31973185  T
287 caccccttacctttg 301  Q
    |||||||||||||||    
31973184 caccccttacctttg 31973170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 7968211 - 7968153
Alignment:
97 atgtttgtgactttgaatgtggttaagataaaa-tcaaatgtttgaattgatctaaaag 154  Q
    |||| ||||||||| |||||||||||||||||| ||||||| ||  |||||||||||||    
7968211 atgtgtgtgactttaaatgtggttaagataaaagtcaaatgcttctattgatctaaaag 7968153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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