View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_low_15 (Length: 279)
Name: NF3709_low_15
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_15 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 43733364 - 43733102
Alignment:
| Q |
16 |
ataataactgttctacctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgag |
115 |
Q |
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| T |
43733364 |
ataataactgttctacctttgtgttacaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttcag |
43733265 |
T |
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| Q |
116 |
attagcttgaagaagaaaggctgaagatcaattgaaggaagaaaagcaagcaatcgattgaaggaaaaggatgaaggtggttcaatttatcatacttatt |
215 |
Q |
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| T |
43733264 |
attagcttgaagaagaaaggctgaagatcaattgaaggaagaaaagtaagcaatcgattaaaggaaaaggatgaaggcggttcaatttatcatacttatt |
43733165 |
T |
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| Q |
216 |
ataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaac |
279 |
Q |
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| T |
43733164 |
ataaaagtcaatta-gtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaac |
43733102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 22310168 - 22310096
Alignment:
| Q |
204 |
atcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaa |
277 |
Q |
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| T |
22310168 |
atcatacttattctaaaagcttattaggtcaagtaaatgcttaaccctaatagctttggt-atttccctcccaa |
22310096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 11483944 - 11483888
Alignment:
| Q |
202 |
ttatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgct |
258 |
Q |
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| T |
11483944 |
ttatcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattgct |
11483888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 9070896 - 9070972
Alignment:
| Q |
203 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaac |
279 |
Q |
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| T |
9070896 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgttttccctcccaaac |
9070972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 18141050 - 18140978
Alignment:
| Q |
207 |
atacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaac |
279 |
Q |
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| T |
18141050 |
atacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgctttccctcccaaac |
18140978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 5336241 - 5336312
Alignment:
| Q |
208 |
tacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaac |
279 |
Q |
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| T |
5336241 |
tacttattataaaagtcaattaggtcaagcaaatgcttaaccctaattgcttttgtattttccctcccaaac |
5336312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 36588813 - 36588916
Alignment:
| Q |
32 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgagattagcttgaagaaga |
131 |
Q |
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| T |
36588813 |
ctttgtgttgcaataacagaatgttggtttgggattttaactttgc-tttcatgtgcttgttaactttgct-tgtggatttgagtttagcatgaagaaga |
36588910 |
T |
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| Q |
132 |
aaggct |
137 |
Q |
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|||||| |
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| T |
36588911 |
aaggct |
36588916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 28336619 - 28336548
Alignment:
| Q |
203 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcc |
274 |
Q |
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| T |
28336619 |
tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc |
28336548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 45619170 - 45619273
Alignment:
| Q |
32 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgagattagcttgaagaaga |
131 |
Q |
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| T |
45619170 |
ctttgtgttgcaataacaaaatgttggtttgggattttaactttgc-tttcatgtgcttgttaactttgct-tgtggatttgagtttagcatgaagaaga |
45619267 |
T |
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| Q |
132 |
aaggct |
137 |
Q |
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|||||| |
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| T |
45619268 |
aaggct |
45619273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 47503634 - 47503689
Alignment:
| Q |
203 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgct |
258 |
Q |
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| T |
47503634 |
tatcatacttactctaaaagctaattaagtcaagcaattgcttaaccctaattgct |
47503689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 3937481 - 3937529
Alignment:
| Q |
32 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttt |
80 |
Q |
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| T |
3937481 |
ctttgtgttgcaataacagaatgttggtttggaattttaactttgcttt |
3937529 |
T |
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