View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_low_19 (Length: 256)
Name: NF3709_low_19
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 278512 - 278757
Alignment:
| Q |
4 |
ctgttttttatttcttctttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgata |
103 |
Q |
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| T |
278512 |
ctgttttttatttcttctttccaactgatatgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgata |
278611 |
T |
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| Q |
104 |
ttataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatc |
203 |
Q |
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| T |
278612 |
ttataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatc |
278711 |
T |
|
| Q |
204 |
agaacttaagcggttattgttcagaggatgagtccaattcatctca |
249 |
Q |
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| T |
278712 |
agaccttaagcggttattgttcagaggatgagtccaattcttctca |
278757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 24653551 - 24653405
Alignment:
| Q |
97 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
196 |
Q |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
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| Q |
197 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattc |
243 |
Q |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattc |
24653405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
96 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
195 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
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| Q |
196 |
tcaggatcagaacttaagc |
214 |
Q |
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||| ||||||| ||||||| |
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| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
97 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
193 |
Q |
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|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
194 |
tctcaggatcaga |
206 |
Q |
| |
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||||||||||||| |
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| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
14 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
112 |
Q |
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| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
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| Q |
113 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
212 |
Q |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
33 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
132 |
Q |
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| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
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| Q |
133 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
205 |
Q |
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| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
155 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
206 |
Q |
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| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
29 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
128 |
Q |
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|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
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| Q |
129 |
atgt |
132 |
Q |
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|||| |
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| T |
41800039 |
atgt |
41800036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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