View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_low_2 (Length: 722)
Name: NF3709_low_2
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 350 - 707
Target Start/End: Original strand, 47367175 - 47367536
Alignment:
| Q |
350 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatccaatagttgtgagaaagtaaaactcctaagaatgtccat----tgttt |
445 |
Q |
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| T |
47367175 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatccaatagttgtgagaaagtaaaactcctaagaatgtccatatattgttt |
47367274 |
T |
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| Q |
446 |
taaatttcaagaaatatttcttggcttacgttaaagttaaacttcatgtttcaagcattcatagaatcaatatatcatagatgttcataaaccaaaatat |
545 |
Q |
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| T |
47367275 |
taaatttcaagaaatatttcttggcttacgtaaaaattaaacttcatgtttcaagcattcatagaatcaatatatcatagatgttcatacaacaaaatat |
47367374 |
T |
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| Q |
546 |
ttatccaacccaccaaaaatcaagcactttcatgtttcaagcaatcaactaaaactcaatatatcatagttgtacattttactagcattcatataatcaa |
645 |
Q |
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| T |
47367375 |
ttatccaacccaccaaaaatcaagcactttcatgtttcaagcaatcaactaaaactcaatatatcatagttgtacattttactagcattcatataatcaa |
47367474 |
T |
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| Q |
646 |
ctgccgaatcacaccatatacatgcaatagaataaaaaggaaaacttccattacaaggattg |
707 |
Q |
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| T |
47367475 |
ctgccgaattacaccatatacatgcaatagaataaaaaggaaaacttccattacaaggattg |
47367536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 643
Target Start/End: Original strand, 38489729 - 38489800
Alignment:
| Q |
574 |
ttcatgtttcaagcaatcaactaaaactcaa--tatatcatagttgtacattttactagcattcatataatc |
643 |
Q |
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| T |
38489729 |
ttcaagtttcaagcaatcaattaaaactcaaaatatatcatagctttacattttaccagtattcatataatc |
38489800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 616
Target Start/End: Complemental strand, 48446728 - 48446682
Alignment:
| Q |
572 |
ctttcatgtttcaagcaatcaactaaaactc--aatatatcatagtt |
616 |
Q |
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| T |
48446728 |
ctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtt |
48446682 |
T |
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