View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_low_24 (Length: 242)
Name: NF3709_low_24
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_24 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18012393 - 18012628
Alignment:
| Q |
1 |
ctataaagcgcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaacaacatgcgtcagacaccaaaaacactttcaatc |
100 |
Q |
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| T |
18012393 |
ctataaagcgcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaacatcatgtgtcagacaccaaaaacactttcaatc |
18012492 |
T |
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| Q |
101 |
tgaagtgtcggtactacatagatgacgaccatgatttaaaatattgttcctaatataaaatggctaaaatgaagtgataattgatttgaattaaccaaac |
200 |
Q |
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| T |
18012493 |
tgaagtgtcggtactacatagatgacgaccatgatttaaaacattgttcctaatataaaaaggctaaaatgaagtgataattgatttgaattaaccaaac |
18012592 |
T |
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| Q |
201 |
atgcttgcttacctgcatcataactacaatgcctcctatg |
240 |
Q |
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| T |
18012593 |
a----tgcttacctgcatcataactacaatgcctcctatg |
18012628 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 32851947 - 32851914
Alignment:
| Q |
93 |
tttcaatctgaagtgtcggtactacatagatgac |
126 |
Q |
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| T |
32851947 |
tttcaatctgaagtgtcggtactacatagatgac |
32851914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 30779 - 30736
Alignment:
| Q |
75 |
gtcagacaccaaaaacactttcaatctgaagtgtcggtactaca |
118 |
Q |
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| T |
30779 |
gtcaaacaccaaacacactttcaatctgaagtgtcagtactaca |
30736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 34739047 - 34739007
Alignment:
| Q |
75 |
gtcagacaccaaaaacactttcaatctgaagtgtcggtact |
115 |
Q |
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|||| |||||||| |||||||||||| |||||||||||||| |
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| T |
34739047 |
gtcacacaccaaacacactttcaatcagaagtgtcggtact |
34739007 |
T |
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