View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3709_low_25 (Length: 241)
Name: NF3709_low_25
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 24529290 - 24529055
Alignment:
| Q |
1 |
ataaacagttcggcattgtgttgagagtaatcgtggaaatcgaagacttgaagagtcttccagaggtaacgccacctgcgagagataagacttgtacgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24529290 |
ataaacagttcggcattgtgttgagagtaatcgtggaaatcgaagacttgaagagtcttccagaggtaacgccacctgcgagagataagacttgtacgaa |
24529191 |
T |
|
| Q |
101 |
cgcaggtgtcggtagggaggaaagacagaatgtgacgtagtaaggcgtccggaagagtgctgattcggtcgtcaatgccatcatcttcgnnnnnnncttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
24529190 |
cgcaggtgtcggtagggaggaaagacagaatgtggcgtagtaaggcgtccggaagagtgctgattctgtcgtcaatgtcatcatcttcgtttttttcttc |
24529091 |
T |
|
| Q |
201 |
tgctttcagtcgtcgtttcgccttcattgtcgtttc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24529090 |
tgctttcagtcgtcgtttcgccttcattgtcgtttc |
24529055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University