View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_low_26 (Length: 239)

Name: NF3709_low_26
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_low_26
NF3709_low_26
[»] chr8 (9 HSPs)
chr8 (3-239)||(31040681-31040917)
chr8 (15-137)||(31075902-31076024)
chr8 (38-235)||(30647942-30648139)
chr8 (1-188)||(26088282-26088469)
chr8 (38-235)||(28865094-28865291)
chr8 (17-235)||(14726371-14726589)
chr8 (189-239)||(31076042-31076092)
chr8 (38-146)||(15329087-15329195)
chr8 (38-146)||(15509456-15509564)
[»] chr1 (1 HSPs)
chr1 (35-235)||(26087520-26087720)
[»] chr3 (2 HSPs)
chr3 (8-177)||(4818937-4819106)
chr3 (65-173)||(48730203-48730311)
[»] chr7 (2 HSPs)
chr7 (38-179)||(6612306-6612447)
chr7 (63-162)||(17294160-17294259)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 31040681 - 31040917
Alignment:
Q  3 gaagcaccatactcttttggttgtgttgcaaggcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataat 102  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040681 gaagcaccatactcttttggttgttttgcaaggcaaggtggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataat 31040780  T
Q  103 ttcagtggcaaattgagcatgtcccatagatgcagctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaacatatggatcctcc 202  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31040781 ttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatggaattaaatctatatattccaaaacatatggatcctcc 31040880  T
Q  203 tcaattagtgtatagagaaggtttatatcaccttctt 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  31040881 tcaattagtgtatagagaaggtttatatcaccttctt 31040917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 31075902 - 31076024
Alignment:
Q  15 tcttttggttgtgttgcaaggcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaa 114  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  31075902 tcttttggttgttttgcaatgcaaggtggattggactgaacccttgttgatttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa 31076001  T
Q  115 ttgagcatgtcccatagatgcag 137  Q
    |||| ||||||||||||||||||    
T  31076002 ttgaacatgtcccatagatgcag 31076024  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 30648139 - 30647942
Alignment:
Q  38 agatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcag 137  Q
    |||||||| || ||||| |||||| |||||| |||| | |||||||||||||||||  ||||||||||| ||||||| | |  ||| ||||| |||||||    
T  30648139 agatggatggggctgaatccttgtggatttaacttcaaagcaaatgaaggtttcaaattcataatttcaatggcaaagtcaatatgacccatggatgcag 30648040  T
Q  138 ctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaacatatggatcctcctcaattagtgtatagagaaggtttatatcacct 235  Q
    | ||||||| |||||||||||||||||||||| |||||||||  |||||||  |||||||| || | ||||| ||| ||||| || | ||||||||||    
T  30648039 caatatgtaaaggagtttcaacaaatggtattgaatctatatgctccaaaatgtatggatcatcttgaattactgtgtagaggagatctatatcacct 30647942  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 26088469 - 26088282
Alignment:
Q  1 atgaagcaccatactcttttggttgtgttgcaaggcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcata 100  Q
    ||||| ||||||||||||||||  || |||||  || |||||||| |||||||| |||||  | |||||||||||||||||||||||||| ||  |||||    
T  26088469 atgaaacaccatactcttttggccgttttgcatagcgagatggatgggactgaatccttgcgggtttagcttccatgcaaatgaaggttttaaattcata 26088370  T
Q  101 atttcagtggcaaattgagcatgtcccatagatgcagctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaa 188  Q
    |||||| |||||||  |   ||| |||| ||||||||| ||||||| ||||||||||||||||| ||||| ||||||||  |||||||    
T  26088369 atttcattggcaaacggcatatgacccaaagatgcagcaatatgtaaaggagtttcaacaaatgatattacatctatattctccaaaa 26088282  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 28865291 - 28865094
Alignment:
Q  38 agatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcag 137  Q
    |||||||| || ||||| |||||  ||||||||||  | ||||| |||||||||||  ||||||| |||||||||||  ||   || |||||||||||||    
T  28865291 agatggatggggctgaatccttgcggatttagctttaaggcaaacgaaggtttcaacgtcataatctcagtggcaaaaggaaggtgacccatagatgcag 28865192  T
Q  138 ctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaacatatggatcctcctcaattagtgtatagagaaggtttatatcacct 235  Q
    | ||||||| |||||||||||||||||||||||||||||||   |||||||| |||||||| || | ||||| ||| ||||| || |||| |||||||    
T  28865191 cgatatgtaaaggagtttcaacaaatggtattaaatctatacgctccaaaacgtatggatcatcttgaattactgtgtagaggagatttacatcacct 28865094  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 14726589 - 14726371
Alignment:
Q  17 ttttggttgtgttgcaaggcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaatt 116  Q
    |||||||||| |||||| || |||||||| || ||||| |||||  ||| ||||||||| |||||||||||||| ||  |||||| ||||||||||||      
T  14726589 ttttggttgttttgcaaagcgagatggatggggctgaatccttgcagatctagcttccaagcaaatgaaggttttaaattcataacttcagtggcaaacc 14726490  T
Q  117 gagcatgtcccatagatgcagctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaacatatggatcctcctcaattagtgtata 216  Q
    |   ||| ||||||||||||||  |||||| ||||||||||||||| | ||||||||||||||  |||||||   ||||||| || | ||||| ||| ||    
T  14726489 ggagatgacccatagatgcagcagtatgtaaaggagtttcaacaaaagttattaaatctatatgctccaaaatggatggatcatcttgaattactgtgta 14726390  T
Q  217 gagaaggtttatatcacct 235  Q
    ||| || | ||||||||||    
T  14726389 gaggagatctatatcacct 14726371  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 31076042 - 31076092
Alignment:
Q  189 catatggatcctcctcaattagtgtatagagaaggtttatatcaccttctt 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31076042 catatggatcctcctcaattagtgtataaagaaggtttatatcaccttctt 31076092  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 15329195 - 15329087
Alignment:
Q  38 agatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcag 137  Q
    |||||||| || ||||| |||||  ||||||||||  | ||||| |||||||||||  ||||||| ||||||||||| |||   || |||||||||||||    
T  15329195 agatggatggggctgaatccttgcggatttagctttaaagcaaacgaaggtttcaacgtcataatctcagtggcaaaatgaaggtgacccatagatgcag 15329096  T
Q  138 ctatatgta 146  Q
    | |||||||    
T  15329095 cgatatgta 15329087  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 15509564 - 15509456
Alignment:
Q  38 agatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcag 137  Q
    |||||||| || ||||| |||||  ||||||||||  | ||||| |||||||||||  ||||||| ||||||||||| |||   || |||||||||||||    
T  15509564 agatggatggggctgaatccttgcggatttagctttaaagcaaacgaaggtttcaacgtcataatctcagtggcaaaatgaaggtgacccatagatgcag 15509465  T
Q  138 ctatatgta 146  Q
    | |||||||    
T  15509464 cgatatgta 15509456  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 235
Target Start/End: Original strand, 26087520 - 26087720
Alignment:
Q  35 gcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatg 134  Q
    ||||||||||| |||||||| ||||| |||||||| ||||| ||| |||||||||||||  |||||||||||||||||||||||  ||| ||||||||||    
T  26087520 gcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaattgaagatgacccatagatg 26087619  T
Q  135 cagctatatgtagaggagtttcaacaaatggtattaaatctatatattccaaaacatatggatcctcctcaattagtgtatagagaaggtttatatcacc 234  Q
    ||||  |||||| |||||||||||||||||||||||||||||||   |||||||  |||||||| || | ||||| ||| ||||| || | |||||||||    
T  26087620 cagccgtatgtaaaggagtttcaacaaatggtattaaatctatacgctccaaaatgtatggatcatcttgaattactgtgtagaggagatctatatcacc 26087719  T
Q  235 t 235  Q
    |    
T  26087720 t 26087720  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 4819106 - 4818937
Alignment:
Q  8 accatactcttttggttgtgttgcaaggcaagatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcag 107  Q
    |||||||| |||||||||| |||||  ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||| || |    
T  4819106 accatactgttttggttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcgg 4819007  T
Q  108 tggcaaattgagcatgtcccatagatgcagctatatgtagaggagtttcaacaaatggtattaaatctat 177  Q
     |||||||||   ||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  4819006 aggcaaattggagatgacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaatctat 4818937  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 48730203 - 48730311
Alignment:
Q  65 tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcagctatatgtagaggagtttcaacaaatg 164  Q
    ||||| ||||| |||||||||||||| | ||||||||| |||||||||||    | ||||||   || |||||| ||||| | |||||| ||||||||||    
T  48730203 tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg 48730302  T
Q  165 gtattaaat 173  Q
    |||||||||    
T  48730303 gtattaaat 48730311  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 6612306 - 6612447
Alignment:
Q  38 agatggattggactgaacccttgttgatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcag 137  Q
    |||||||| || ||||| |||||  | ||||||||||| |||||||||||||||||  ||||||||||||| ||||||||   ||| ||||||  |||||    
T  6612306 agatggatggggctgaatccttgcgggtttagcttccaagcaaatgaaggtttcaacatcataatttcagtagcaaattggagatgacccatatctgcag 6612405  T
Q  138 ctatatgtagaggagtttcaacaaatggtattaaatctatat 179  Q
     |||||||| |||||||||||||||||||||  |||||||||    
T  6612406 atatatgtaaaggagtttcaacaaatggtatcgaatctatat 6612447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 17294160 - 17294259
Alignment:
Q  63 gatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgagcatgtcccatagatgcagctatatgtagaggagtttcaacaaa 162  Q
    ||||||||||||| |||||||||||||||||  ||||||  ||  |||||||  ||  ||| ||| ||||||| || ||||| | |||||||||||||||    
T  17294160 gatttagcttccaagcaaatgaaggtttcaaattcataacctcgatggcaaaccgaagatgccccctagatgcggcgatatgcaaaggagtttcaacaaa 17294259  T

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