View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_low_30 (Length: 236)
Name: NF3709_low_30
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18012076 - 18011856
Alignment:
| Q |
1 |
aatatcgatcatatgaagcaccaaatacaaacacagatactgtacacgacactgatactgataagtcgacatcaataataatttaaagactaattcattt |
100 |
Q |
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| T |
18012076 |
aatatcgatcatatgaagcaccatatacaaaaacagataccgtacatgacattgatactgataagtcgacatcaataataatttaaagactaattcattt |
18011977 |
T |
|
| Q |
101 |
agtttagctatcacctagggtttgtttgattgacttaggttagtttatctattaacataagcacttgtgagattatttgagagatcgtagttgattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18011976 |
agtttagctatcacctagggtttgtttgattgacttaggttagtttatctattaacataagcacttgtgagattgtttgagagatcgtagttgattttat |
18011877 |
T |
|
| Q |
201 |
attatctcttgttacataaat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18011876 |
attatctcttgttacataaat |
18011856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 24417660 - 24417712
Alignment:
| Q |
128 |
gattgacttaggttagtttatctattaacataagcacttgtgagattatttga |
180 |
Q |
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|||||||||| | |||||||||||||| ||||| |||||||||| ||||||| |
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| T |
24417660 |
gattgacttatttgagtttatctattaatataagtacttgtgagactatttga |
24417712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 47584577 - 47584539
Alignment:
| Q |
146 |
tatctattaacataagcacttgtgagattatttgagaga |
184 |
Q |
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|||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
47584577 |
tatctattgacataagcacttgtgagactatttgagaga |
47584539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 28769292 - 28769320
Alignment:
| Q |
156 |
cataagcacttgtgagattatttgagaga |
184 |
Q |
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| T |
28769292 |
cataagcacttgtgagattatttgagaga |
28769320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 8094434 - 8094394
Alignment:
| Q |
145 |
ttatctattaacataagcacttgtgagattatttgagagat |
185 |
Q |
| |
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||||||| || ||||||||||||||||| |||||||||||| |
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|
| T |
8094434 |
ttatctactagcataagcacttgtgagactatttgagagat |
8094394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 8017579 - 8017523
Alignment:
| Q |
128 |
gattgacttaggttagtttatctattaacataagcacttgtgagattatttgagaga |
184 |
Q |
| |
|
|||||||||| | || ||||||||| ||||||||||||||| ||||||||| |||| |
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|
| T |
8017579 |
gattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggaga |
8017523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 19978080 - 19978036
Alignment:
| Q |
140 |
ttagtttatctattaacataagcacttgtgagattatttgagaga |
184 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| | ||||||||| |
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|
| T |
19978080 |
ttagtttatctattaaaataagcacttgcgagactgtttgagaga |
19978036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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