View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_low_32 (Length: 230)

Name: NF3709_low_32
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_low_32
NF3709_low_32
[»] chr3 (4 HSPs)
chr3 (22-230)||(35243718-35243926)
chr3 (1-101)||(35244172-35244274)
chr3 (22-101)||(27972620-27972701)
chr3 (2-64)||(41874519-41874581)
[»] chr2 (6 HSPs)
chr2 (1-101)||(41602457-41602559)
chr2 (1-102)||(25306812-25306915)
chr2 (1-82)||(25302817-25302898)
chr2 (1-64)||(17308695-17308758)
chr2 (1-64)||(1015729-1015792)
chr2 (1-63)||(33187213-33187275)
[»] chr8 (3 HSPs)
chr8 (1-101)||(44687156-44687258)
chr8 (1-64)||(1173516-1173579)
chr8 (1-64)||(30634268-30634331)
[»] chr1 (3 HSPs)
chr1 (1-108)||(33773208-33773317)
chr1 (1-64)||(44782222-44782285)
chr1 (1-64)||(46679710-46679773)
[»] chr4 (1 HSPs)
chr4 (1-101)||(8005911-8006013)
[»] chr7 (2 HSPs)
chr7 (1-95)||(30511164-30511260)
chr7 (1-64)||(29924638-29924701)
[»] chr5 (4 HSPs)
chr5 (1-64)||(8081510-8081573)
chr5 (1-64)||(25725847-25725910)
chr5 (1-64)||(25502064-25502127)
chr5 (1-64)||(40382796-40382859)
[»] chr6 (1 HSPs)
chr6 (1-44)||(34350393-34350436)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 35243926 - 35243718
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactccatcctctgattcgtaataacaagcactcacgcacacat 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35243926 gtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactccatcctctgattcataataacaagcactcacgcacacat 35243827  T
Q  122 atcaacactgtttgaaaaaatacattaaccttttggcgtgaaattattttgtgcttcccttctaagcaaactcttggtccaaagagataggaagtcacaa 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  35243826 atcaacactgtttgaaaaaatacattaaccttttggcatgaaattattttgtgccttccatctaagcaaactcttggtccaaagagataggaagtcacaa 35243727  T
Q  222 aattcctgg 230  Q
    |||||||||    
T  35243726 aattcctgg 35243718  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35244172 - 35244274
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  35244172 cttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 35244271  T
Q  99 ata 101  Q
    |||    
T  35244272 ata 35244274  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 27972620 - 27972701
Alignment:
Q  22 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgtaata 101  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||   |||||||||||| |||||    
T  27972620 gtgatgactcctaaagatcattatgcattctatcttttcattgtatgggaccttgatattcggtatcctctgattcataata 27972701  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41874519 - 41874581
Alignment:
Q  2 ttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||| || ||||||||||||||| ||||   | |||||||||||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattg 41874581  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41602457 - 41602559
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 41602556  T
Q  99 ata 101  Q
    |||    
T  41602557 ata 41602559  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 25306812 - 25306915
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||    
T  25306812 cttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctaattcata 25306911  T
Q  99 ataa 102  Q
    ||||    
T  25306912 ataa 25306915  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25302817 - 25302898
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25302817 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattatatgggaccttgatactc 25302898  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17308695 - 17308758
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||| | ||||  || |||||||||||||||    
T  17308695 cttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattg 17308758  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1015729 - 1015792
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || | |||||| |||||| ||||  || |||||||||||||||    
T  1015729 cttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattg 1015792  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33187275 - 33187213
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 63  Q
    |||||||||||||||||||| || ||||||| ||||||  ||||  || ||||||||||||||    
T  33187275 cttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccatt 33187213  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44687156 - 44687258
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  44687156 cttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 44687255  T
Q  99 ata 101  Q
    |||    
T  44687256 ata 44687258  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1173516 - 1173579
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| || ||||| ||| |||||    
T  1173516 cttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattg 1173579  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30634331 - 30634268
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||   | |||||||||||||||    
T  30634331 cttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattg 30634268  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33773208 - 33773317
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| |||| ||    
T  33773208 cttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccatcgtatgggaccttgatactcgacatcctctaattcata 33773307  T
Q  99 ataacaagca 108  Q
    ||||||||||    
T  33773308 ataacaagca 33773317  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44782285 - 44782222
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  44782285 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 44782222  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46679710 - 46679773
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  46679710 cttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 46679773  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8005911 - 8006013
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcgta 98  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||    
T  8005911 cttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgacactcggcatcctctgattcata 8006010  T
Q  99 ata 101  Q
    |||    
T  8006011 ata 8006013  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30511164 - 30511260
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattc 95  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||    
T  30511164 cttttatacaattgtttcttactgataactcctagagaacattatgcattctatcttttcattgtataggaccttgatactcggcatcctctgattc 30511260  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29924638 - 29924701
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    |||||||| |||||||| ||||| ||||||||||||||| ||||  || |||||||||||||||    
T  29924638 cttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattg 29924701  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8081510 - 8081573
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  8081510 cttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 8081573  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25725910 - 25725847
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||| |||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  25725910 cttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 25725847  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25502127 - 25502064
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||  || ||||| |||||||||    
T  25502127 cttttatacaattgtttcttgataatgactcctagagagaattacacaatctatatttccattg 25502064  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40382859 - 40382796
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 64  Q
    ||||| ||||||||||||||||| |||| |||||||||| ||||  || | |||||||||||||    
T  40382859 cttttttacaattgtttcttagtaatgattcctagagagaattacacaatttatctttccattg 40382796  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34350436 - 34350393
Alignment:
Q  1 cttttatacaattgtttcttagtgatgactcctagagagcatta 44  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||    
T  34350436 cttttatacaattgtttcttagtaatgactcctaaagagaatta 34350393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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