View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3709_low_4 (Length: 475)
Name: NF3709_low_4
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_low_4 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 45645673 - 45645205
Alignment:
| Q |
12 |
tcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnna |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45645673 |
tcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcttttttta |
45645574 |
T |
 |
| Q |
112 |
ttataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45645573 |
ttataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaa |
45645474 |
T |
 |
| Q |
212 |
acaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45645473 |
acaataagagaattcaccaccaattgatgatcccaattgtgttattagagacactggtccacctccaaggcccactataccagagccctgcacctccaaa |
45645374 |
T |
 |
| Q |
312 |
cgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatct |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45645373 |
cga-cccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatct |
45645275 |
T |
 |
| Q |
412 |
ccttgtgaatgtgaatc--------agttaattgtatattcacaaaaattttggtgattgcaagaggtag |
473 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
45645274 |
ccttgtgaatgtgaatcatctccatagttaattgtatattcacaaaaaatttggtcattgcaagaggtag |
45645205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 1397809 - 1397720
Alignment:
| Q |
330 |
tccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtga |
419 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| || |||| ||||||||| |||||||||||||| | |||||||||||||||||| |
|
|
| T |
1397809 |
tccacaacctatcacagttttaggcaatgaaatagaagaaccagaggtggaatctaatgtaagagtttctaaactaagatctccttgtga |
1397720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 1390533 - 1390499
Alignment:
| Q |
38 |
aaattctactcttttgtttccaacactaaatgctt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390533 |
aaattctactcttttgtttccaacactaaatgctt |
1390499 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 34666170 - 34665758
Alignment:
| Q |
10 |
catcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnn |
109 |
Q |
| |
|
||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| | |||| |
|
|
| T |
34666170 |
catcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgtaatgtcaaaaagtagaaaacgg---ggtctttttt |
34666074 |
T |
 |
| Q |
110 |
nattataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcacc |
209 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||| |||||||||| |
|
|
| T |
34666073 |
tattagaggagttgacacaacaccgtcacccgaaaccacagcggcatctccaaaactgagtatacttgatgcgtttgactccttgttcaacaatggcacc |
34665974 |
T |
 |
| Q |
210 |
aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||| | ||| |||||| |
|
|
| T |
34665973 |
aaacaataagagaatttaccaccaattgatgatcccaattgtgttatgagagacaccggcccgcctccaaggccaactataccagag-cttgcacctcca |
34665875 |
T |
 |
| Q |
310 |
aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat |
409 |
Q |
| |
|
|||| |||| ||| | | ||||||| |||||||| |||||||||||||||||||| |||||| ||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
34665874 |
aacgtccccgcattatcagttccacaacctatcactgttttaggaaatgaaacaggacttccactggtggattccaatgaaagagtatcaacactaagat |
34665775 |
T |
 |
| Q |
410 |
ctccttgtgaatgtgaa |
426 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34665774 |
ctccttgtgaatgtgaa |
34665758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 34646476 - 34646064
Alignment:
| Q |
10 |
catcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnn |
109 |
Q |
| |
|
||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| | |||| |
|
|
| T |
34646476 |
catcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgtaatgtcaaaaagtagaaaacgg---ggtctttttt |
34646380 |
T |
 |
| Q |
110 |
nattataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcacc |
209 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||| |||||||||| |
|
|
| T |
34646379 |
tattagaggagttgacacaacaccgtcacccgaaaccacagcggcatctccaaaactgagtatacttgatgcgtttgactccttgttcaacaatggcacc |
34646280 |
T |
 |
| Q |
210 |
aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
34646279 |
aaacaataagagaatttaccaccaattgatgatcccaattgtgttatgagagacaccggcccgcctccaaggccaactataccagag-cttgcgcctcca |
34646181 |
T |
 |
| Q |
310 |
aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat |
409 |
Q |
| |
|
|||| |||| ||| | | ||||||| |||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
34646180 |
aacgtccccgcattatcagttccacaacctatcactattttaggaaatgaaacaggacttccgctggtggattccaatgaaagagtatcaacactaagat |
34646081 |
T |
 |
| Q |
410 |
ctccttgtgaatgtgaa |
426 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34646080 |
ctccttgtgaatgtgaa |
34646064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 421
Target Start/End: Original strand, 19649096 - 19649476
Alignment:
| Q |
37 |
caaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaacattgtc |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| |||| || || |||||| | | |||||||||||||||| ||| |
|
|
| T |
19649096 |
caaattctattcttttgtttccaacactaaatgcttctaacgtcaaatagtagaaagcttgagggtcttttttcacaaaaggagttgacacaacaccgtc |
19649195 |
T |
 |
| Q |
137 |
acccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatc--caatggcaccaaacaataagagaattcaccaccaa |
234 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||| ||||| |||| || || | | |||||||| |||||| ||||| |||| |||||||| |
|
|
| T |
19649196 |
accagaaaccacagcggcatctccaaaattgagtttgctcgtcttgttcgagtc-----aaccaacaatggcaacaaacagtaagaaaatttaccaccaa |
19649290 |
T |
 |
| Q |
235 |
ttgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatccc-gtattgttatttcca |
333 |
Q |
| |
|
|||| ||| ||| |||||| | |||||||| |||||| |||||| || |||||||| || | | ||| |||| ||||| |||| || | |||| |
|
|
| T |
19649291 |
ttgaagatttcaattgtgttgtaagagacacaggtccaattccaagaccaactataccgga-agtttccccttgaaac-atccctctattattgtgtcca |
19649388 |
T |
 |
| Q |
334 |
catcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaat |
421 |
Q |
| |
|
||||| || |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19649389 |
catccgataacagttttaggaaatgaaacagaatgaccggtggtggaatccaatgtaagagtctcaacactaagttctccttgtgaat |
19649476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 36 - 427
Target Start/End: Complemental strand, 40718154 - 40717767
Alignment:
| Q |
36 |
ccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaacattgt |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| | |||||||||||||| ||||| | |
|
|
| T |
40718154 |
ccaaattctattcttttgtttccaacactaaatgcttccaatgtcaaatagtagaaaactgtggggtcttttttcactataggagttgacaaaacatcct |
40718055 |
T |
 |
| Q |
136 |
cacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaaacaataagagaattcaccaccaat |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || || |||||||||| | |||||| | ||||||||||||||||| |||||| |
|
|
| T |
40718054 |
caccagaaaccacagcggcatctccaaaactgagtttgcttgtcctgtttgactcaag---agacaatggaagcaaacaataagagaattttgaaccaat |
40717958 |
T |
 |
| Q |
236 |
tgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatcccgtattgttatttccaca |
335 |
Q |
| |
|
||| ||||| | |||||||| |||||||| || |||||||||||||| ||||||||||||| ||| ||| |||||| | |||||||| ||||||| |
|
|
| T |
40717957 |
tgacgatccaagttgtgttataagagacacgggaccacctccaaggccaactataccagagct-tgcacctttaaacgacactgtattgttggttccaca |
40717859 |
T |
 |
| Q |
336 |
tcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaatgtgaat |
427 |
Q |
| |
|
|||||||||||||||||||||||||| | | | ||||| | ||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40717858 |
tcctatcacagttttaggaaatgaaatatgaccaccagtagaggactctaatgtaagagtatcaacactaagatctccttgtgaatgtgaat |
40717767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 26 - 415
Target Start/End: Complemental strand, 14183407 - 14183022
Alignment:
| Q |
26 |
tgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgac |
125 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||| |||| ||||| ||| || | |||||| |||||| |
|
|
| T |
14183407 |
tgaagacccttcaaattctattcttttgttaccaacactaaatgcttccaatgtcaaatagtagaaaactataggatcctttttcactataggggttgac |
14183308 |
T |
 |
| Q |
126 |
acaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactc---cttgttatccaatggcaccaaacaataagaga |
222 |
Q |
| |
|
|||||| || || ||||||||||| | ||||||||| ||||||| || || ||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
14183307 |
acaacaccatccccggaaaccacagccgtgtctccaaaattgagtttgcttgtcgtgtttgactcaaccgggtt------tggcaacaaacaataagaga |
14183214 |
T |
 |
| Q |
223 |
attcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatcccgtat |
322 |
Q |
| |
|
||| || |||||||||||||||| ||||| || ||||| ||||||||||||||||||| ||||||||||| | ||| ||| |||| || | |||| |
|
|
| T |
14183213 |
attttgcatcaattgatgatcccaattgtgtaataagagatgctggtccacctccaaggccaactataccagaact-tgcaccttcaaatgacactgtat |
14183115 |
T |
 |
| Q |
323 |
tgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctcctt |
415 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| ||| |||||||| ||| || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
14183114 |
tgtcagttccacatcctatcacagttttaggaaatgaaataggatgtccagtggaggactctaatgtaagagtatcaacactaagatttcctt |
14183022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 210 - 427
Target Start/End: Complemental strand, 14192164 - 14191948
Alignment:
| Q |
210 |
aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca |
309 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| |||||||| || || || | |||| | ||||||| ||| | ||| || |||||||||| ||||||| || |
|
|
| T |
14192164 |
aaacaataggagaatttaccaccagttgaggatcccaattgagtgataaaagacgcgggtccacttccgaagccaacgataccagagct-tgcgccttca |
14192066 |
T |
 |
| Q |
310 |
aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat |
409 |
Q |
| |
|
| || |||||||| ||||||||||||||||| | |||||||||||||| | |||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
14192065 |
taggacaaaatattgttagttccacatcctatcacaatattaggaaatgaaactgtaagtccattggtggattccaatgtaagagtgtcaacactaagat |
14191966 |
T |
 |
| Q |
410 |
ctccttgtgaatgtgaat |
427 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
14191965 |
ctcctcctgaatgtgaat |
14191948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 14201182 - 14200973
Alignment:
| Q |
210 |
aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| || | | ||||||| ||||||| ||||||||| ||||||||||||| || ||| | |
|
|
| T |
14201182 |
aaacaataagagaattttccaccaattgatgtacccaattgagatggaagagacataggtccacttccaaggccaactataccagagct-tgggccatga |
14201084 |
T |
 |
| Q |
310 |
aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat |
409 |
Q |
| |
|
|||| || ||||| ||| |||||||||||||| ||||||||||||||||| | | || ||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
14201083 |
aacgtccctgtatttctatatccacatcctatcattgttttaggaaatgaaactgagtagccggtggtggaatctaatgtaagagtctccacactaagat |
14200984 |
T |
 |
| Q |
410 |
ctccttgtgaa |
420 |
Q |
| |
|
|||||||||| |
|
|
| T |
14200983 |
atccttgtgaa |
14200973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 14192350 - 14192300
Alignment:
| Q |
33 |
cctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaa |
83 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
14192350 |
cctccaatttctactcttctatttccaacactaaatgcttccaatgtcaaa |
14192300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 14201350 - 14201301
Alignment:
| Q |
33 |
cctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaa |
82 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
14201350 |
cctccaaattctattaatttgtttcccacactaaatgcttctaatgtcaa |
14201301 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 205 - 425
Target Start/End: Complemental strand, 34302942 - 34302723
Alignment:
| Q |
205 |
gcaccaaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgc |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||| | ||||||||||||||||| |||| |||||||| | ||| |
|
|
| T |
34302942 |
gcaccaaacaataagagaatttaccaccaattgacggtcccaattgtgttattagagatgcaggtccacctccaaggccaactacaccagagct-tacgc |
34302844 |
T |
 |
| Q |
305 |
ctccaaacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacact |
404 |
Q |
| |
|
| |||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||| || |||||||||||||| |||| ||| |
|
|
| T |
34302843 |
gtttaaacgaccctatattgttagttccacatcctataacagttttaggaaatgaaacaggacgcccagtggtagattccaatgtaagagtctcaagact |
34302744 |
T |
 |
| Q |
405 |
aagatctccttgtgaatgtga |
425 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34302743 |
aagatctccttgtgaatgtga |
34302723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 34303126 - 34302979
Alignment:
| Q |
30 |
gaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaa |
129 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| ||||||||||||| ||||||| |||| ||| |||| |||| | |||||||||||||| | |
|
|
| T |
34303126 |
gaccctgcaaattctactcttttgtctccaacgctaaatgcttctattgtcaaatagtagaaaaatgaatggtcttttttaactataggagttgacaata |
34303027 |
T |
 |
| Q |
130 |
cattgtcacccgaaaccacagcggcatctccaaaactgagtttactcg |
177 |
Q |
| |
|
|||||| ||| ||||| | ||| ||||||||||| |||||||||||| |
|
|
| T |
34303026 |
cattgtgaccagaaacaattgcgacatctccaaaattgagtttactcg |
34302979 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 28403294 - 28403249
Alignment:
| Q |
34 |
ctccaaattctactcttttgtttccaacactaaatgcttctaatgt |
79 |
Q |
| |
|
||||| |||||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
28403294 |
ctccatattctattctattgtttcctacactaaatgcttctaatgt |
28403249 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 45396191 - 45396236
Alignment:
| Q |
34 |
ctccaaattctactcttttgtttccaacactaaatgcttctaatgt |
79 |
Q |
| |
|
||||| |||||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
45396191 |
ctccatattctattctattgtttcctacactaaatgcttctaatgt |
45396236 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University