View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_low_4 (Length: 475)

Name: NF3709_low_4
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_low_4
NF3709_low_4
[»] chr4 (3 HSPs)
chr4 (12-473)||(45645205-45645673)
chr4 (330-419)||(1397720-1397809)
chr4 (38-72)||(1390499-1390533)
[»] chr5 (3 HSPs)
chr5 (10-426)||(34665758-34666170)
chr5 (10-426)||(34646064-34646476)
chr5 (37-421)||(19649096-19649476)
[»] chr8 (6 HSPs)
chr8 (36-427)||(40717767-40718154)
chr8 (26-415)||(14183022-14183407)
chr8 (210-427)||(14191948-14192164)
chr8 (210-420)||(14200973-14201182)
chr8 (33-83)||(14192300-14192350)
chr8 (33-82)||(14201301-14201350)
[»] chr6 (2 HSPs)
chr6 (205-425)||(34302723-34302942)
chr6 (30-177)||(34302979-34303126)
[»] chr2 (2 HSPs)
chr2 (34-79)||(28403249-28403294)
chr2 (34-79)||(45396191-45396236)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 45645673 - 45645205
Alignment:
12 tcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnna 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
45645673 tcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcttttttta 45645574  T
112 ttataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45645573 ttataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaa 45645474  T
212 acaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaa 311  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
45645473 acaataagagaattcaccaccaattgatgatcccaattgtgttattagagacactggtccacctccaaggcccactataccagagccctgcacctccaaa 45645374  T
312 cgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatct 411  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45645373 cga-cccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatct 45645275  T
412 ccttgtgaatgtgaatc--------agttaattgtatattcacaaaaattttggtgattgcaagaggtag 473  Q
    |||||||||||||||||        ||||||||||||||||||||||| |||||| ||||||||||||||    
45645274 ccttgtgaatgtgaatcatctccatagttaattgtatattcacaaaaaatttggtcattgcaagaggtag 45645205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 1397809 - 1397720
Alignment:
330 tccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtga 419  Q
    |||||| ||||||||||||||||| ||||||| ||     |||| ||||||||| |||||||||||||| | ||||||||||||||||||    
1397809 tccacaacctatcacagttttaggcaatgaaatagaagaaccagaggtggaatctaatgtaagagtttctaaactaagatctccttgtga 1397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 1390533 - 1390499
Alignment:
38 aaattctactcttttgtttccaacactaaatgctt 72  Q
    |||||||||||||||||||||||||||||||||||    
1390533 aaattctactcttttgtttccaacactaaatgctt 1390499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 34666170 - 34665758
Alignment:
10 catcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnn 109  Q
    ||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |   ||||          
34666170 catcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgtaatgtcaaaaagtagaaaacgg---ggtctttttt 34666074  T
110 nattataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcacc 209  Q
     |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||   ||||||||||    
34666073 tattagaggagttgacacaacaccgtcacccgaaaccacagcggcatctccaaaactgagtatacttgatgcgtttgactccttgttcaacaatggcacc 34665974  T
210 aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca 309  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||| | ||| ||||||    
34665973 aaacaataagagaatttaccaccaattgatgatcccaattgtgttatgagagacaccggcccgcctccaaggccaactataccagag-cttgcacctcca 34665875  T
310 aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat 409  Q
    ||||  |||| ||| | | ||||||| |||||||| |||||||||||||||||||| |||||| ||||||| ||||||| |||||| |||||||||||||    
34665874 aacgtccccgcattatcagttccacaacctatcactgttttaggaaatgaaacaggacttccactggtggattccaatgaaagagtatcaacactaagat 34665775  T
410 ctccttgtgaatgtgaa 426  Q
    |||||||||||||||||    
34665774 ctccttgtgaatgtgaa 34665758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 34646476 - 34646064
Alignment:
10 catcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnn 109  Q
    ||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |   ||||          
34646476 catcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgtaatgtcaaaaagtagaaaacgg---ggtctttttt 34646380  T
110 nattataggagttgacacaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcacc 209  Q
     |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||   ||||||||||    
34646379 tattagaggagttgacacaacaccgtcacccgaaaccacagcggcatctccaaaactgagtatacttgatgcgtttgactccttgttcaacaatggcacc 34646280  T
210 aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca 309  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||    
34646279 aaacaataagagaatttaccaccaattgatgatcccaattgtgttatgagagacaccggcccgcctccaaggccaactataccagag-cttgcgcctcca 34646181  T
310 aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat 409  Q
    ||||  |||| ||| | | ||||||| ||||||||  ||||||||||||||||||| |||||  ||||||| ||||||| |||||| |||||||||||||    
34646180 aacgtccccgcattatcagttccacaacctatcactattttaggaaatgaaacaggacttccgctggtggattccaatgaaagagtatcaacactaagat 34646081  T
410 ctccttgtgaatgtgaa 426  Q
    |||||||||||||||||    
34646080 ctccttgtgaatgtgaa 34646064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 421
Target Start/End: Original strand, 19649096 - 19649476
Alignment:
37 caaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaacattgtc 136  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||  |||| || ||  ||||||       |  | ||||||||||||||||  |||    
19649096 caaattctattcttttgtttccaacactaaatgcttctaacgtcaaatagtagaaagcttgagggtcttttttcacaaaaggagttgacacaacaccgtc 19649195  T
137 acccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatc--caatggcaccaaacaataagagaattcaccaccaa 234  Q
    ||| |||||||||||||||||||||||| ||||||| |||||  |||| || ||      | |  |||||||| |||||| ||||| |||| ||||||||    
19649196 accagaaaccacagcggcatctccaaaattgagtttgctcgtcttgttcgagtc-----aaccaacaatggcaacaaacagtaagaaaatttaccaccaa 19649290  T
235 ttgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatccc-gtattgttatttcca 333  Q
    |||| |||  ||| |||||| | |||||||| ||||||  |||||| || |||||||| ||    | | |||  |||| |||||  |||| || | ||||    
19649291 ttgaagatttcaattgtgttgtaagagacacaggtccaattccaagaccaactataccgga-agtttccccttgaaac-atccctctattattgtgtcca 19649388  T
334 catcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaat 421  Q
    ||||| || ||||||||||||||||||||||     || ||||||||||||||||||||||| ||||||||||| |||||||||||||    
19649389 catccgataacagttttaggaaatgaaacagaatgaccggtggtggaatccaatgtaagagtctcaacactaagttctccttgtgaat 19649476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 36 - 427
Target Start/End: Complemental strand, 40718154 - 40717767
Alignment:
36 ccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaacattgt 135  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||  |||| ||||||  |||||       | |||||||||||||| |||||  |    
40718154 ccaaattctattcttttgtttccaacactaaatgcttccaatgtcaaatagtagaaaactgtggggtcttttttcactataggagttgacaaaacatcct 40718055  T
136 cacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactccttgttatccaatggcaccaaacaataagagaattcaccaccaat 235  Q
    |||| |||||||||||||||||||||||||||||||| || ||  ||||||||||      |  |||||| | |||||||||||||||||    ||||||    
40718054 caccagaaaccacagcggcatctccaaaactgagtttgcttgtcctgtttgactcaag---agacaatggaagcaaacaataagagaattttgaaccaat 40717958  T
236 tgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatcccgtattgttatttccaca 335  Q
    ||| ||||| |  |||||||| |||||||| || |||||||||||||| |||||||||||||  ||| |||  ||||||  | ||||||||  |||||||    
40717957 tgacgatccaagttgtgttataagagacacgggaccacctccaaggccaactataccagagct-tgcacctttaaacgacactgtattgttggttccaca 40717859  T
336 tcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaatgtgaat 427  Q
    |||||||||||||||||||||||||| | | |  ||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||    
40717858 tcctatcacagttttaggaaatgaaatatgaccaccagtagaggactctaatgtaagagtatcaacactaagatctccttgtgaatgtgaat 40717767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 26 - 415
Target Start/End: Complemental strand, 14183407 - 14183022
Alignment:
26 tgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgac 125  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||  |||| |||||  ||| ||       | |||||| ||||||    
14183407 tgaagacccttcaaattctattcttttgttaccaacactaaatgcttccaatgtcaaatagtagaaaactataggatcctttttcactataggggttgac 14183308  T
126 acaacattgtcacccgaaaccacagcggcatctccaaaactgagtttactcgttgtgtttgactc---cttgttatccaatggcaccaaacaataagaga 222  Q
    ||||||   || || ||||||||||| |  ||||||||| ||||||| || || |||||||||||   |  |||      ||||| ||||||||||||||    
14183307 acaacaccatccccggaaaccacagccgtgtctccaaaattgagtttgcttgtcgtgtttgactcaaccgggtt------tggcaacaaacaataagaga 14183214  T
223 attcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctccaaacgatcccgtat 322  Q
    |||   || |||||||||||||||| ||||| || |||||  ||||||||||||||||||| ||||||||||| |  ||| ||| |||| ||  | ||||    
14183213 attttgcatcaattgatgatcccaattgtgtaataagagatgctggtccacctccaaggccaactataccagaact-tgcaccttcaaatgacactgtat 14183115  T
323 tgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctcctt 415  Q
    ||| | ||||||||||||||||||||||||||||||||| |||   |||||||| ||| || ||||||||||| ||||||||||||| |||||    
14183114 tgtcagttccacatcctatcacagttttaggaaatgaaataggatgtccagtggaggactctaatgtaagagtatcaacactaagatttcctt 14183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 210 - 427
Target Start/End: Complemental strand, 14192164 - 14191948
Alignment:
210 aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca 309  Q
    |||||||| ||||||| ||||||| |||| |||||||| || || || | |||| | ||||||| ||| | ||| || ||||||||||  ||||||| ||    
14192164 aaacaataggagaatttaccaccagttgaggatcccaattgagtgataaaagacgcgggtccacttccgaagccaacgataccagagct-tgcgccttca 14192066  T
310 aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat 409  Q
     | ||     |||||||| ||||||||||||||||| | |||||||||||||| |    |||| ||||||| |||||||||||||| |||||||||||||    
14192065 taggacaaaatattgttagttccacatcctatcacaatattaggaaatgaaactgtaagtccattggtggattccaatgtaagagtgtcaacactaagat 14191966  T
410 ctccttgtgaatgtgaat 427  Q
    |||||  |||||||||||    
14191965 ctcctcctgaatgtgaat 14191948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 14201182 - 14200973
Alignment:
210 aaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgcctcca 309  Q
    ||||||||||||||||  |||||||||||||  ||||| || | |   |||||||  ||||||| ||||||||| |||||||||||||  || |||   |    
14201182 aaacaataagagaattttccaccaattgatgtacccaattgagatggaagagacataggtccacttccaaggccaactataccagagct-tgggccatga 14201084  T
310 aacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagat 409  Q
    ||||  || |||||  ||| ||||||||||||||  ||||||||||||||||| | |   || ||||||||||| ||||||||||| || ||||||||||    
14201083 aacgtccctgtatttctatatccacatcctatcattgttttaggaaatgaaactgagtagccggtggtggaatctaatgtaagagtctccacactaagat 14200984  T
410 ctccttgtgaa 420  Q
     ||||||||||    
14200983 atccttgtgaa 14200973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 14192350 - 14192300
Alignment:
33 cctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaa 83  Q
    ||||||| |||||||||| | |||||||||||||||||||| |||||||||    
14192350 cctccaatttctactcttctatttccaacactaaatgcttccaatgtcaaa 14192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 14201350 - 14201301
Alignment:
33 cctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaa 82  Q
    ||||||||||||| |  ||||||||| |||||||||||||||||||||||    
14201350 cctccaaattctattaatttgtttcccacactaaatgcttctaatgtcaa 14201301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 205 - 425
Target Start/End: Complemental strand, 34302942 - 34302723
Alignment:
205 gcaccaaacaataagagaattcaccaccaattgatgatcccaaatgtgttattagagacactggtccacctccaaggcccactataccagagccctgcgc 304  Q
    ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||  | ||||||||||||||||| |||| ||||||||  | |||    
34302942 gcaccaaacaataagagaatttaccaccaattgacggtcccaattgtgttattagagatgcaggtccacctccaaggccaactacaccagagct-tacgc 34302844  T
305 ctccaaacgatcccgtattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacact 404  Q
     |  |||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||| |  |||||||| || |||||||||||||| |||| |||    
34302843 gtttaaacgaccctatattgttagttccacatcctataacagttttaggaaatgaaacaggacgcccagtggtagattccaatgtaagagtctcaagact 34302744  T
405 aagatctccttgtgaatgtga 425  Q
    |||||||||||||||||||||    
34302743 aagatctccttgtgaatgtga 34302723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 34303126 - 34302979
Alignment:
30 gaccctccaaattctactcttttgtttccaacactaaatgcttctaatgtcaaaacgtagtaaactgaagggtcnnnnnnnattataggagttgacacaa 129  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||| |||||||  |||| ||| |||| ||||       | ||||||||||||||  |    
34303126 gaccctgcaaattctactcttttgtctccaacgctaaatgcttctattgtcaaatagtagaaaaatgaatggtcttttttaactataggagttgacaata 34303027  T
130 cattgtcacccgaaaccacagcggcatctccaaaactgagtttactcg 177  Q
    |||||| ||| ||||| |  ||| ||||||||||| ||||||||||||    
34303026 cattgtgaccagaaacaattgcgacatctccaaaattgagtttactcg 34302979  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 28403294 - 28403249
Alignment:
34 ctccaaattctactcttttgtttccaacactaaatgcttctaatgt 79  Q
    ||||| |||||| ||| |||||||| ||||||||||||||||||||    
28403294 ctccatattctattctattgtttcctacactaaatgcttctaatgt 28403249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 45396191 - 45396236
Alignment:
34 ctccaaattctactcttttgtttccaacactaaatgcttctaatgt 79  Q
    ||||| |||||| ||| |||||||| ||||||||||||||||||||    
45396191 ctccatattctattctattgtttcctacactaaatgcttctaatgt 45396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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