View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_10 (Length: 532)
Name: NF3710_high_10
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 187 - 516
Target Start/End: Complemental strand, 54080584 - 54080255
Alignment:
| Q |
187 |
ctgatcctttgcgtgaacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54080584 |
ctgatcctttgcgtggacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
54080485 |
T |
|
| Q |
287 |
tgccactgtcagttccctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
386 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54080484 |
tgccactgtcagtctcctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
54080385 |
T |
|
| Q |
387 |
ctaggtgttcattcttatacatggttcaagaatgctattatatttacccttctgagagtgacttactcagtgggggatcattgatcatttctgaactctt |
486 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54080384 |
ctaggtgttcattcttatacaaggttcaagaatgctattatatttacccttctgagagtgacttactcagtaggggatcattgatcatttctgaactctt |
54080285 |
T |
|
| Q |
487 |
cttttggattcatttgttaatgatcatatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54080284 |
cttttggattcatttgttaatgatcatatt |
54080255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 54080756 - 54080620
Alignment:
| Q |
18 |
acatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54080756 |
acatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattg |
54080657 |
T |
|
| Q |
118 |
actatatgcatgataatatgacatggtgtttttgctc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54080656 |
actatatgcatgataatatgacatggtgtttttgctc |
54080620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 427
Target Start/End: Complemental strand, 54083669 - 54083555
Alignment:
| Q |
308 |
ttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttataca |
407 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||| |||||||||| | |
|
|
| T |
54083669 |
ttttgtataagctagtagtggt----atatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattcttatgga |
54083575 |
T |
|
| Q |
408 |
tggttcaagaatgctattat |
427 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
54083574 |
aggttcaagaatgcttttat |
54083555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 54084104 - 54084009
Alignment:
| Q |
25 |
cattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgactat |
122 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||| | ||||||||| |||||||||| | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
54084104 |
cattggcatgatttatggcatgtgccaatacaat--gccgactcatacgatggccactctacttagtggaggatgaaaggttgtttattgttgactat |
54084009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University