View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_100 (Length: 247)
Name: NF3710_high_100
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_100 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 34281118 - 34281047
Alignment:
| Q |
24 |
tgagcttaatggattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34281118 |
tgagcttaatggattacttacttcctcattcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
34281047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 34289799 - 34289733
Alignment:
| Q |
35 |
gattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaagatgac |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
34289799 |
gattacttacttcctccttcgtggggaggccttaagaaagatgagcatcaatttacttaaagatgac |
34289733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 34302186 - 34302118
Alignment:
| Q |
35 |
gattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaagatgacgt |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||| || ||||||||||||| |||||| |
|
|
| T |
34302186 |
gattacttacttcctccttcgtggggagacgttaagaaagatgagtatcaatttacttaaaggtgacgt |
34302118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 34281038 - 34281002
Alignment:
| Q |
192 |
aattacgcaatgcatctatataatcctaattaatccc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34281038 |
aattacgcaatgcatctatataatcctaattaatccc |
34281002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University