View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_101 (Length: 242)

Name: NF3710_high_101
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_101
NF3710_high_101
[»] chr5 (5 HSPs)
chr5 (1-170)||(35854447-35854620)
chr5 (3-125)||(35802504-35802630)
chr5 (132-224)||(35802661-35802753)
chr5 (1-71)||(10521309-10521379)
chr5 (187-224)||(10521072-10521109)
[»] chr4 (8 HSPs)
chr4 (1-64)||(45876803-45876866)
chr4 (1-64)||(55705896-55705959)
chr4 (1-64)||(47293471-47293534)
chr4 (1-64)||(56208598-56208661)
chr4 (1-60)||(45858872-45858931)
chr4 (170-224)||(45878670-45878724)
chr4 (170-224)||(47293235-47293289)
chr4 (180-224)||(56208881-56208925)
[»] chr2 (1 HSPs)
chr2 (1-65)||(24357469-24357533)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35854620 - 35854447
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacctttttcatgttg----acttgcctagagtcattaatc 96  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||    |||||||||||||||||||||    
T  35854620 atagcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtctaacttgcctagagtcattaatc 35854521  T
Q  97 tcaaacgaaccacactatctagcactttgtcattgtcattgtcaaggttaaagttttgagaaacccttcctcga 170  Q
    ||||| |||||||| |||||||||||||  |||  |||||||||||||||||||||||||||||| ||||||||    
T  35854520 tcaaatgaaccacattatctagcactttcacatcatcattgtcaaggttaaagttttgagaaacctttcctcga 35854447  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 35802504 - 35802630
Alignment:
Q  3 agcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacctttttcatgttg----acttgcctagagtcattaatctc 98  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||    ||||||| ||||||||||| |||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtctaacttgccgagagtcattaacctc 35802603  T
Q  99 aaacgaaccacactatctagcactttg 125  Q
    |||||||||||| ||||||||||||||    
T  35802604 aaacgaaccacattatctagcactttg 35802630  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 35802661 - 35802753
Alignment:
Q  132 tcattgtcaaggttaaagttttgagaaacccttcctcgaattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgcc 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35802661 tcattgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgcc 35802753  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10521379 - 10521309
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacctttttcat 71  Q
    ||||||||||||||||| ||||||||||| ||||| ||| || ||||||||| ||||| || || ||||||    
T  10521379 atagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatgtggaatctctttcat 10521309  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 10521109 - 10521072
Alignment:
Q  187 taagattttctgctacgatagctcctgctcccattgcc 224  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10521109 taagattttctgctacgatatctcctgctcccgttgcc 10521072  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45876803 - 45876866
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacct 64  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||    
T  45876803 atagcatcaaccaaaccatgggatgctgcatccttaccggtccaaaccctcccttgtgcaacct 45876866  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55705959 - 55705896
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacct 64  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||| |||||||    
T  55705959 atagcatcaaccaaaccatgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacct 55705896  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47293534 - 47293471
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacct 64  Q
    |||||||||||||||||||||||| |||| ||||||| |||| ||||||| || ||||||||||    
T  47293534 atagcatcaaccaaaccatgagatactgcgtccttactggtccaaatccttccctgtgcaacct 47293471  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 56208598 - 56208661
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacct 64  Q
    |||||||||||||||||| |||||  |||||| ||||||||||||| |||||| ||||||||||    
T  56208598 atagcatcaaccaaaccaagagatagtgcatctttaccggtctaaaccctcccctgtgcaacct 56208661  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45858872 - 45858931
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgca 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||| |||| | ||||||    
T  45858872 atagcatcaaccagaccatgagatactgcatccttaccggtccaaaccctctcctgtgca 45858931  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 45878670 - 45878724
Alignment:
Q  170 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgcc 224  Q
    ||||||||| ||||| || ||| ||||||| || |||||||||||||||||||||    
T  45878670 aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgcc 45878724  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 47293289 - 47293235
Alignment:
Q  170 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgcc 224  Q
    ||||||||| ||||| |||||||||||||| || ||| ||||||| |||||||||    
T  47293289 aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgcc 47293235  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 56208881 - 56208925
Alignment:
Q  180 gttaaagtaagattttctgctacgatagctcctgctcccattgcc 224  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||    
T  56208881 gttaaggtaagattttctgcaacaataactcctgctcccattgcc 56208925  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24357533 - 24357469
Alignment:
Q  1 atagcatcaaccaaaccatgagatgctgcatccttaccggtctaaatcctcccatgtgcaacctt 65  Q
    |||||||||||||||||||| ||||||||||| ||||| ||| |||  ||||| ||||| |||||    
T  24357533 atagcatcaaccaaaccatgtgatgctgcatctttaccagtccaaactctcccctgtgctacctt 24357469  T

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