View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_104 (Length: 239)
Name: NF3710_high_104
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_104 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 2847493 - 2847314
Alignment:
| Q |
41 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaa |
140 |
Q |
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| T |
2847493 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcagaaggaa |
2847394 |
T |
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| Q |
141 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
220 |
Q |
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| T |
2847393 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
2847314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 3160703 - 3160882
Alignment:
| Q |
41 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaa |
140 |
Q |
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| T |
3160703 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcaggaggaa |
3160802 |
T |
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| Q |
141 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
220 |
Q |
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| T |
3160803 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
3160882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 2874309 - 2874128
Alignment:
| Q |
41 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaa |
140 |
Q |
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| T |
2874309 |
cagtaactttgttttacacgacgaacatgcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaacggagacttgcaagcaggaggaa |
2874210 |
T |
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| Q |
141 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgt |
222 |
Q |
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| T |
2874209 |
actctccaagaattgtcctggcatgtgcatatgatgttaagttgaagtcaaaaaatggatggtttatttagattgtctccgt |
2874128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 2889029 - 2888860
Alignment:
| Q |
41 |
cagtaactttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaa |
140 |
Q |
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| T |
2889029 |
cagtaactttgttttacacgatgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaacaggaaactttcatgcaggaggaa |
2888930 |
T |
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| Q |
141 |
actctccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
210 |
Q |
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| T |
2888929 |
acagtccaagaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 3145840 - 3146002
Alignment:
| Q |
49 |
ttgttttacacgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctcca |
148 |
Q |
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| T |
3145840 |
ttgttttacacaacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaactttcatgcaggaggaaaccgtcca |
3145939 |
T |
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| Q |
149 |
agaattgtcctggcatttgcatatgatgtcaagttgaagtc-aaaaaatggatggtttattta |
210 |
Q |
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| T |
3145940 |
agaattgtcctggcatttgcatatgatgtcaagttgaagtcaaaaaaatggatggtttattta |
3146002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 2797826 - 2797964
Alignment:
| Q |
77 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
176 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| | |||| |||||| ||||| | |||| |||| | ||||| || ||||| |
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| T |
2797826 |
tcaacttaaagcgcatagacactgaaacgttgtctgcgaaccatagacttcgatgcaggcggaaagacgccaataattatt-----atttgaatgtgatg |
2797920 |
T |
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| Q |
177 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
220 |
Q |
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| T |
2797921 |
tgaagttgaagtcaaaaaatggatggtttatttagattgtctcc |
2797964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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