View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_112 (Length: 235)

Name: NF3710_high_112
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_112
NF3710_high_112
[»] chr6 (6 HSPs)
chr6 (19-229)||(16731020-16731239)
chr6 (19-235)||(20189683-20189910)
chr6 (19-235)||(22146081-22146308)
chr6 (96-209)||(28117508-28117621)
chr6 (96-209)||(9314122-9314235)
chr6 (96-209)||(22464083-22464196)
[»] chr3 (4 HSPs)
chr3 (19-207)||(36037214-36037411)
chr3 (183-222)||(35412273-35412312)
chr3 (193-235)||(2783761-2783803)
chr3 (193-222)||(18645112-18645141)
[»] chr4 (5 HSPs)
chr4 (19-202)||(24605466-24605656)
chr4 (33-235)||(7395120-7395321)
chr4 (193-235)||(2541400-2541442)
chr4 (19-55)||(24605402-24605438)
chr4 (191-235)||(22093476-22093520)
[»] chr7 (5 HSPs)
chr7 (96-194)||(22083779-22083878)
chr7 (19-117)||(26808982-26809088)
chr7 (193-235)||(26809173-26809215)
chr7 (28-120)||(6214516-6214616)
chr7 (122-191)||(6215034-6215104)
[»] scaffold0134 (1 HSPs)
scaffold0134 (96-209)||(6906-7019)
[»] chr2 (3 HSPs)
chr2 (96-209)||(30719445-30719558)
chr2 (193-235)||(11059436-11059478)
chr2 (193-235)||(13517944-13517986)
[»] chr5 (5 HSPs)
chr5 (19-117)||(35432728-35432834)
chr5 (96-209)||(17944318-17944432)
chr5 (193-235)||(28562796-28562838)
chr5 (193-235)||(28566364-28566406)
chr5 (193-222)||(42062594-42062623)
[»] chr8 (2 HSPs)
chr8 (20-66)||(587132-587178)
chr8 (20-66)||(626744-626790)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 16731239 - 16731020
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataa 110  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| | |||||||| ||||        ||||| ||||||||||| ||||||||||    
T  16731239 attgaaacctaaattcaattcaagcaattgatagaagctagtgttaatagtcatacacacgatattaagaaaagcatcaagcaagaatagttatgaataa 16731140  T
Q  111 agactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaatcaaagaaaattagctagacatag 209  Q
    |||||||||| |||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  16731139 agactaaattatattgatagcaacaaagtcaaaaactacatagattcacagatacaatagattcaccttggcttaatcaaaggaaattagctagacatag 16731040  T
Q  210 agatacaaataaatagcatg 229  Q
    ||||||||||||||||||||    
T  16731039 agatacaaataaatagcatg 16731020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 20189683 - 20189910
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataa 110  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||| ||||        ||||||||| ||||||| ||||||||||    
T  20189683 attgaaacctaaattcaattcaagcaatcgatagaagttagtgttaatagtcatacacacgatattaagaaaagcattaagtaagaatacttatgaataa 20189782  T
Q  111 agactaaattgtattgatagcaaca--gagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaaattagctagacat 207  Q
    | ||| |||| |||||||| ||| |  |||||||||| |   |||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  20189783 atactgaattatattgataacaatatagagtcaaaagttgtgtggatttacagatacaatagattcatcttggcttaatcaaaggaaattagctagacat 20189882  T
Q  208 agagatacaaataaatagcatggaaaat 235  Q
    ||||||||| ||||||||||||||||||    
T  20189883 agagatacacataaatagcatggaaaat 20189910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 22146308 - 22146081
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataa 110  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||| ||||        ||||||||| ||||||| ||||||||||    
T  22146308 attgaaacctaaattcaattcaagcaatcgatagaagttagtgttaatagtcatacacacgatattaagaaaagcattaagtaagaatacttatgaataa 22146209  T
Q  111 agactaaattgtattgatagcaaca--gagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaaattagctagacat 207  Q
    | ||| |||| |||||||| ||| |  |||||||||| |   |||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  22146208 atactgaattatattgataacaatatagagtcaaaagttgtgtggatttacagatacaatagattcatcttggcttaatcaaaggaaattagctagacat 22146109  T
Q  208 agagatacaaataaatagcatggaaaat 235  Q
    ||||||||| ||||||||||||||||||    
T  22146108 agagatacacataaatagcatggaaaat 22146081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 28117621 - 28117508
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  28117621 aataattctgaataaagactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 28117523  T
Q  195 attagctagacatag 209  Q
    |||||||||||||||    
T  28117522 attagctagacatag 28117508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 9314122 - 9314235
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  9314122 aataattctgaataaagactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 9314220  T
Q  195 attagctagacatag 209  Q
    ||||||| |||||||    
T  9314221 attagctcgacatag 9314235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 22464196 - 22464083
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||||  ||||||||||| ||||||||||||| |||| ||||||||||| ||    
T  22464196 aataattctgaataaaaactgaattttattgataacaatagagtcaaaagctatgtggattcacagatacaatagattcatcttgacttaatcaaag-aa 22464098  T
Q  195 attagctagacatag 209  Q
    |||||||||||||||    
T  22464097 attagctagacatag 22464083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 36037214 - 36037411
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataa 110  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||   |||||||| ||||        ||||||||||||||||||||||||||||    
T  36037214 attgtaacctaaattcaattcaagcaatcgatagaagctagtgttaataatcatacacacgatattatgaaaagcattaagcaagaataattatgaataa 36037313  T
Q  111 agactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaatcaaagaaaattagctagacat 207  Q
    | ||| |||| |||||||| ||| ||||||||||||||||| |||||||||  || ||||||||| ||| |||||||||||| |||||||||| ||||    
T  36037314 atactgaattatattgataacaatagagtcaaaagctacatagattcacagagacgatagattcatcttggcttaatcaaaggaaattagctacacat 36037411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 35412312 - 35412273
Alignment:
Q  183 taatcaaagaaaattagctagacatagagatacaaataaa 222  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  35412312 taatcaaaggaaattagctagacatagagatacaaataaa 35412273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 2783803 - 2783761
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  2783803 aaattagctagacatagagatacaaattaatagcatgggaaat 2783761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 18645112 - 18645141
Alignment:
Q  193 aaattagctagacatagagatacaaataaa 222  Q
    ||||||||||||||||||||||||||||||    
T  18645112 aaattagctagacatagagatacaaataaa 18645141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 24605466 - 24605656
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataa 110  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||||        |||||||||||| |||||||||||||||    
T  24605466 attgaaacctaaattcaattcaaacaatcgatagaagctagtgttaatagtcatacacatgatattaagaaaagcattaagcaataataattatgaataa 24605565  T
Q  111 agactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaatcaaagaaaattagcta 202  Q
    | ||| |||| ||||||||  || ||||||||||||||| ||| ||||||  ||||||||||||| ||| |||||||||||| ||||||||||    
T  24605566 atactgaattatattgataataatagagtcaaaagctac-tgg-ttcacatatacaatagattcatcttggcttaatcaaaggaaattagcta 24605656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 7395120 - 7395321
Alignment:
Q  33 tcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataaagactaaattgtat 124  Q
    ||||||||||||| |||||||| ||||||| ||| | |||||||||||||        ||||| ||||||||||||||||||||||||| |||  | |||    
T  7395120 tcaattcaagcaatcgatagaaactagtgt-aatagccatacacatgatattaagaaaagcatcaagcaagaataattatgaataaagattaa--tatat 7395216  T
Q  125 tgatagcaacagagtcaaaagctacatgg-attcacaggtacaatagattcacctt-gcttaatcaaagaaaattagctagacatagagatacaaataaa 222  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||        ||||||| |||||||||||||||||||||||    
T  7395217 tgatagcaacagagtcaaaaactacatggaattcacagatacaatagattcaccttagctt--------aaaattaactagacatagagatacaaataaa 7395308  T
Q  223 tagcatggaaaat 235  Q
    ||||||| |||||    
T  7395309 tagcatgaaaaat 7395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 2541442 - 2541400
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  2541442 aaattagctaaacatagaaatacaaataaatagcatggaaaat 2541400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 24605402 - 24605438
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaag 55  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24605402 attgaaacctaaattcaattcaagcaatcgatagaag 24605438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 22093476 - 22093520
Alignment:
Q  191 gaaaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    |||| ||||||| ||||||||||||||||||||| | ||||||||    
T  22093476 gaaatttagctacacatagagatacaaataaatatcttggaaaat 22093520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 22083779 - 22083878
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| ||| |||| || ||||||||||||| |||| ||||||||||||||    
T  22083779 aataattctgaataaagactaaattatattgataacaatagagtcaaaagctacgtgggttcagagatacaatagattcatcttgacttaatcaaagaaa 22083878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 26808982 - 26809088
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgat--------aagcattaagcaagaataattatgaataa 110  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| | | |||||||| |||        |||||||||||||||||||||||||||||    
T  26808982 attgaaacctaaattcaattcaagcaatcgatagaacctagtgttattagtcatacacacgatattaagaaaagcattaagcaagaataattatgaataa 26809081  T
Q  111 agactaa 117  Q
    |||||||    
T  26809082 agactaa 26809088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 26809173 - 26809215
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26809173 aaattagctagacatagagatacaaataaatagcatggaaaat 26809215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 6214516 - 6214616
Alignment:
Q  28 taaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgata--------agcattaagcaagaataattatgaataaagactaaat 119  Q
    |||||||||||||||||| ||||| |||||||||||||| | || ||| | ||||        |||||||||||||||||||||||||||| ||||||||    
T  6214516 taaattcaattcaagcaatcgataaaagctagtgttaatagtcagacaaacgatattaagaaaagcattaagcaagaataattatgaataatgactaaat 6214615  T
Q  120 t 120  Q
    |    
T  6214616 t 6214616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 6215034 - 6215104
Alignment:
Q  122 tattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaatcaaag 191  Q
    |||||||| ||| | ||||||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  6215034 tattgataacaatatagtcaaaagctacatggattcacagatacaatagattcattttggcttaatcaaag 6215104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 7019 - 6906
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| |||||||||||| |||| ||||||||  || |||||||||||||||  || ||||||| ||||||||||||| |||| ||||||||||| ||    
T  7019 aataattctgaataaagactgaattatattgataagaatagagtcaaaagctacccgggttcacagatacaatagattcatcttgacttaatcaaag-aa 6921  T
Q  195 attagctagacatag 209  Q
    |||||||||||||||    
T  6920 attagctagacatag 6906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 30719558 - 30719445
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 194  Q
    ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  30719558 aataattctgaataaaaactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 30719460  T
Q  195 attagctagacatag 209  Q
    ||||| |||||||||    
T  30719459 attagttagacatag 30719445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 11059478 - 11059436
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  11059478 aaattagctagacatagagatacaaataaatagcatgggaaat 11059436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 13517986 - 13517944
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  13517986 aaattagctagacatagagatacaaataaatagcatgggaaat 13517944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 35432728 - 35432834
Alignment:
Q  19 attgaaacctaaattcaattcaagcaaacgatagaagctagtgttaatgggcatacacatgat--------aagcattaagcaagaataattatgaataa 110  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||||| |||        |||||||||||||||||||||||||||||    
T  35432728 attggaacctaaattcaattcaagcaatcgatataagctagtgttaatagtcatacacacgatattaagaaaagcattaagcaagaataattatgaataa 35432827  T
Q  111 agactaa 117  Q
    |||||||    
T  35432828 agactaa 35432834  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 17944432 - 17944318
Alignment:
Q  96 aataattatgaataaagactaaattgtattgatagcaacagagtc-aaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaa 193  Q
    ||||||| |||||||||||| |||| |||||||| ||| |||||| |||| | || ||| ||||||  ||||||||||||| |||| ||||||||||| |    
T  17944432 aataattctgaataaagactgaattatattgataacaatagagtcaaaaaacaacgtgggttcacaaatacaatagattcatcttgacttaatcaaag-a 17944334  T
Q  194 aattagctagacatag 209  Q
    ||||||||||||||||    
T  17944333 aattagctagacatag 17944318  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 28562796 - 28562838
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  28562796 aaattagctagacatagagatacaaattaatagcatgggaaat 28562838  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 28566364 - 28566406
Alignment:
Q  193 aaattagctagacatagagatacaaataaatagcatggaaaat 235  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  28566364 aaattagctagacatagagatacaaattaatagcatgggaaat 28566406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 42062623 - 42062594
Alignment:
Q  193 aaattagctagacatagagatacaaataaa 222  Q
    ||||||||||||||||||||||||||||||    
T  42062623 aaattagctagacatagagatacaaataaa 42062594  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 587178 - 587132
Alignment:
Q  20 ttgaaacctaaattcaattcaagcaaacgatagaagctagtgttaat 66  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  587178 ttgaaacctaaattcaattcaagcaatcgatagaagttagtgttaat 587132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 626744 - 626790
Alignment:
Q  20 ttgaaacctaaattcaattcaagcaaacgatagaagctagtgttaat 66  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  626744 ttgaaacctaaattcaattcaagcaatcgatagaagttagtgttaat 626790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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