View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_117 (Length: 232)
Name: NF3710_high_117
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_117 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 2564670 - 2564876
Alignment:
| Q |
18 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtggg |
117 |
Q |
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| T |
2564670 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtggg |
2564769 |
T |
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| Q |
118 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2564770 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggaggccctgattttaatgaccaattt |
2564869 |
T |
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| Q |
218 |
gatgatg |
224 |
Q |
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|||||| |
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| T |
2564870 |
aatgatg |
2564876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 2574564 - 2574761
Alignment:
| Q |
18 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtggg |
117 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2574564 |
agatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtggg |
2574663 |
T |
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| Q |
118 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaat |
215 |
Q |
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|||||||||||| | | | ||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |
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| T |
2574664 |
ttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttggaggaccaaattctaatgaccaat |
2574761 |
T |
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