View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_124 (Length: 227)
Name: NF3710_high_124
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_124 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 1738373 - 1738156
Alignment:
| Q |
7 |
tagatgtaaggggttcttctttcccctgccattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagttttt |
106 |
Q |
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| T |
1738373 |
tagatgtaaggggttcttgtttccca-gccattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagatttt |
1738275 |
T |
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| Q |
107 |
gagtagcaaaggcagggaaaagaagtgcnnnnnnnnnnnnnattatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgt |
206 |
Q |
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| T |
1738274 |
gagtagcaaaggcagggaaaagaagtgcatatatatatag--ttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgt |
1738177 |
T |
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| Q |
207 |
aaaaaataaaataagtgcact |
227 |
Q |
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| T |
1738176 |
aaaaaataaaataagtgcact |
1738156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 1716959 - 1716837
Alignment:
| Q |
14 |
aaggggttcttctttcccctgccattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatga--gtttttgagta |
111 |
Q |
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| T |
1716959 |
aaggggttcttctttctccggccattacagtctcaagtacacttttaaataatttgtgtcgagatatgcacacttttaaagatacgagggtttttgagca |
1716860 |
T |
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| Q |
112 |
gcaaaggcagggaaaagaagtgc |
134 |
Q |
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| T |
1716859 |
gcaaaggcggggaaatgaagtgc |
1716837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 1716829 - 1716770
Alignment:
| Q |
166 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgca |
225 |
Q |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgca |
1716770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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