View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_132 (Length: 202)
Name: NF3710_high_132
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_132 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 41834430 - 41834298
Alignment:
| Q |
49 |
tcttataattagggaagttagtaacttttttgaaatcatgtaaaataaatggttaatatatttcattttttgtaattaatgaaatagttaaagtggttaa |
148 |
Q |
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| T |
41834430 |
tcttataattagggaagatagtaacttttttgaaatcatgtaaaataaatggttagtatatttcattttttgtaattaatgaaatagttaaagtggttaa |
41834331 |
T |
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| Q |
149 |
taaaatttattcaaaaggtgattgacaagtata |
181 |
Q |
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| T |
41834330 |
taaaatttattcaaaaggtgattgacaagtata |
41834298 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 11642247 - 11642187
Alignment:
| Q |
91 |
aaataaatggttaatatatttcattttttgtaattaatgaaatagttaaagtggttaataa |
151 |
Q |
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| T |
11642247 |
aaataaatggttaatatcatacattttttatagttaatgtaatagtcaaagtggttaataa |
11642187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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