View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_15 (Length: 488)
Name: NF3710_high_15
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 31 - 405
Target Start/End: Original strand, 34926570 - 34926946
Alignment:
| Q |
31 |
gcaacattatttttctcctacgcatttaaaaaacaaaggatggttctccattgattacacagatttgacgcaattccaggctccgagttttaaatatgga |
130 |
Q |
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| T |
34926570 |
gcaacattatttttctcctacgcatttaaaaaacaaaggatggctctcctttgattacacagatttgacgcaattccaggctccgagttttaaatatgga |
34926669 |
T |
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| Q |
131 |
gagttaatgacaggcgttcaaattaaggtcttgtgtttccttcattttggtcttgtgttttgttcatctcttccacacaaaaaagaccacattggatatt |
230 |
Q |
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| T |
34926670 |
gagttaatgacaggcgttcaaattaaggtcttgtgtttccttcattttggtcttgtgttttgttcatctcttccacacaaaaaagaccacattggatatt |
34926769 |
T |
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| Q |
231 |
gagtttgattaattaagatgacactgttaat----nnnnnnncaaattcccacaagtatttttagagaatcaaacacaattttggtcgtcaaaattataa |
326 |
Q |
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| T |
34926770 |
gagtttgattaattaagatgacactattaataataaaaaaaacaaattcccacaagtatttttagagaatcaaacacaattttggtcatcaaaattataa |
34926869 |
T |
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| Q |
327 |
tgagtactttactgatatttattgaaagagagttgataatattaatggtactactacaactaatatagtactggtatca |
405 |
Q |
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| T |
34926870 |
tgagtactttactgatatttattgaa--agagttgataatattaatagtactactgctactaatatagtactggtatca |
34926946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 479
Target Start/End: Original strand, 34926992 - 34927066
Alignment:
| Q |
408 |
tgacattatcaatcacaataggtcaaaatcttcttcatttatgtc---cttcatttctacaatttggagaattat |
479 |
Q |
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| T |
34926992 |
tgacattatcaatcacaatgggtcaaaatcttcttcatttatgtccttcttcatttttacaatttggagagttat |
34927066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 6014112 - 6014161
Alignment:
| Q |
428 |
ggtcaaaatcttcttcatttatgtccttc---atttctacaatttggaga |
474 |
Q |
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| T |
6014112 |
ggtcaaaatcttcttcatttatgtccttctttatttctaccatttggaga |
6014161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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