View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_20 (Length: 474)
Name: NF3710_high_20
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 28935360 - 28934912
Alignment:
| Q |
10 |
gcagagagagatgaggttgtgccgaatgtgttaggaagaaggaagctttctgttatattgagactttgtggagagagaaagagtataatgtaaagtatgt |
109 |
Q |
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| T |
28935360 |
gcagagagagatgaggttgtgccgaatgtgttaggaagaaggaagctttctgttatattgagactttgtggagagagaaagagtataatgtaaagtatgt |
28935261 |
T |
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| Q |
110 |
cattgaacaaatagcacaagaccaatttaggatcccggctctgatatttggaattccattctgctgtatcttctttgcttcagagaaatacaaatttctt |
209 |
Q |
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| T |
28935260 |
catcgaacaaatagcacaagaccaatttaggatcccggctctgatatttggaattccattctgctgtatcttctttgcttcagagaaatacaaatttctt |
28935161 |
T |
|
| Q |
210 |
tccattattgagttatttgttgtttgattaccattgcggcattgtatcaaactggtccagcctaccacataagaagagagagcagtgtttatgtgaagga |
309 |
Q |
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| T |
28935160 |
tccattattgagttatttgttgtttgattaccattgcggcattgtatcaaactggtccagcctgccacataagaagagagagcagtgtttatgtgaagga |
28935061 |
T |
|
| Q |
310 |
ttggcacgttatcatcttttttgttaacatgacatcacagcctatctaagatctgttggactgcttgctatcgagcca-tcagatcacactccagatgtc |
408 |
Q |
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| T |
28935060 |
ttggcacgttatcatctttattgttaacatgacatcacagcctatctaagatctgttggaccgcttactatcgggccactcagatcacactccagatgtc |
28934961 |
T |
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| Q |
409 |
caatcctgggtgtgaggtgtgttaagagtcctacattggatgagatatg |
457 |
Q |
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| T |
28934960 |
caatcctgggtgtgaggtgtgttaagagtcctacattggatgagatatg |
28934912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 48979567 - 48979508
Alignment:
| Q |
398 |
ctccagatgtccaatcctgggtgtga--ggtgtgttaagagtcctacattggatgagata |
455 |
Q |
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|||| ||||||||||||| || |||| |||||||||||||||| ||||| ||||||||| |
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| T |
48979567 |
ctccggatgtccaatcctaggcgtgaagggtgtgttaagagtcccacattagatgagata |
48979508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 43955482 - 43955446
Alignment:
| Q |
388 |
tcagatcacactccagatgtccaatcctgggtgtgag |
424 |
Q |
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| T |
43955482 |
tcaggtcacactccagatttccaatcctgggtgtgag |
43955446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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