View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_22 (Length: 467)
Name: NF3710_high_22
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_22 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 18950793 - 18950372
Alignment:
| Q |
31 |
aatatcttaattttatttattttttatctcttatatgatgatgcacatgtgttggtttatacaggggaacgaggaacagtaattaatcaaaaaagtgaag |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18950793 |
aatatcttaattttatttattttttatctcttatatgatgatgcacatgtgttggtttatacaggggaacgaggaacagtaattaatcaaaaaagtgaag |
18950694 |
T |
|
| Q |
131 |
ttaaagagattcttaaaggtccttatgtggaaggcgtaagtgtgttggtaagtgttttaattttgtcaaatatttttgtggtttaagaagggagg-aaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
18950693 |
ttaaagagattcttaaaggtccttatgtggaaggcgtaagtgtgttggtaagtgttttaattttgtcaaatatttttgtgctataagaagggaggaaaaa |
18950594 |
T |
|
| Q |
230 |
gttcattttactaagaataaagtttttgtttcattgaacaagaaagtcacaacaatcaaattttgttttcaaannnnnnnctttgttcttgtcaaaacca |
329 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18950593 |
gttcattttaataagaataaagtttttgtttcattgaacaagaaagtcacaacaatcaaattttgttttcaattttttttctttgttcttgtcaaaacca |
18950494 |
T |
|
| Q |
330 |
taattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaataaggttgaaga |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18950493 |
taattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaataaggttgaaga |
18950394 |
T |
|
| Q |
430 |
actaagcatcctttgtagaatt |
451 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18950393 |
actaagcatcctttgtagaatt |
18950372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 19005122 - 19004696
Alignment:
| Q |
31 |
aatatcttaa-ttttatttattttttatctcttatatgatgatg---cacatgtgttggt---ttatacaggggaacgaggaacagtaattaatcaaaaa |
123 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19005122 |
aatatcttaaattttatttattttt-atctcttatatgatgatgatgcacatgtgttggtggtttatacaggggaacgaggaacagtaattaatcaaaaa |
19005024 |
T |
|
| Q |
124 |
agtgaagttaaagagattcttaaaggtccttatgtggaaggcgtaagtgtgttggtaagtgttttaattttgtcaaatatttttgtggtttaagaaggga |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
19005023 |
agtgaagttaaagagattcttaaaggtccttatgtggaaggcgtaagtgtgttggtaagtgttttaattttgtcaaatatttttgtgctataagaaggga |
19004924 |
T |
|
| Q |
224 |
ggaaaagttcattttactaagaataaagtttttgtttcattgaacaagaaagtcacaacaatcaaattttgttttcaaa-nnnnnnnctttgttcttgtc |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
19004923 |
ggaaaagttcattttaataagaataaagtttttgtttcattgaacaagaaagtcacaacaatc-aattttgttttcaaatttttttcctttgttcttgtc |
19004825 |
T |
|
| Q |
323 |
aaaaccataattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaataagg |
422 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
19004824 |
aaaaccataactagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtctgctgaataagg |
19004725 |
T |
|
| Q |
423 |
ttgaagaactaagcatcctttgtagaatt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
19004724 |
ttgaagaactaagcatcctttgtagaatt |
19004696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 18949699 - 18949817
Alignment:
| Q |
334 |
tagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaat-aaggttgaagaact |
432 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||| | ||||| ||||||||| |||| ||||||| || | |||||| ||| |||| ||||| |
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| T |
18949699 |
tagaaaaaaggtgaaactttcctctaatgtaaatgatgctagtataaaagcaacatacaaaaaaaggaagaagagtttattgaataaagtttgatgaact |
18949798 |
T |
|
| Q |
433 |
aagcatcctttgtagaatt |
451 |
Q |
| |
|
||||| ||||||| ||||| |
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|
| T |
18949799 |
aagcaccctttgtggaatt |
18949817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 19004023 - 19004141
Alignment:
| Q |
334 |
tagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaat-aaggttgaagaact |
432 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||| | ||||| ||||||||| |||| ||||||| || | |||||| ||| |||| ||||| |
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| T |
19004023 |
tagaaaaaaggtgaaactttcctctaatgtaaatgatgctagtataaaagcaacatacaaaaaaaggaagaagagtttattgaataaagtttgatgaact |
19004122 |
T |
|
| Q |
433 |
aagcatcctttgtagaatt |
451 |
Q |
| |
|
||||| ||||||| ||||| |
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|
| T |
19004123 |
aagcaccctttgtggaatt |
19004141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 450
Target Start/End: Original strand, 10986739 - 10986878
Alignment:
| Q |
311 |
tttgttcttgtcaaaaccataattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggta |
410 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||| || ||||||| || | ||| |||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
10986739 |
tttgttcttgtcacaaccatgactagaagaaaagttaaacttgccttcattgtgaatgatgctgcaaggaaagcaacatacaagaaaagaaagaagggtc |
10986838 |
T |
|
| Q |
411 |
tgttgaataaggttgaagaactaagcatcctttgtagaat |
450 |
Q |
| |
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| ||||| ||||||| ||||| |||| ||||||| |||| |
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| T |
10986839 |
tattgaaaaaggttgctgaacttagcaccctttgtggaat |
10986878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 11095754 - 11095868
Alignment:
| Q |
311 |
tttgttcttgtcaaaaccataattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggta |
410 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||| ||||||| || | ||| || ||||||||||| |||| | |||||||||||| ||||||| || |
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|
| T |
11095754 |
tttgttcttgtcacaaccatggttagaactaaggttaaacttgccttcattgtcaacgatgctgcaaggaaagcagcatacaagaaaaggaagaagagtc |
11095853 |
T |
|
| Q |
411 |
tgttgaataaggttg |
425 |
Q |
| |
|
|||| || ||||||| |
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|
| T |
11095854 |
tgttcaaaaaggttg |
11095868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 451
Target Start/End: Original strand, 13308156 - 13308282
Alignment:
| Q |
325 |
aaccataattagaaaaaaggtaaaacttgaatttaatgtaaatgatgctgcaagaaaagaaacatacaagaaaacgaagaagggtatgttgaataaggtt |
424 |
Q |
| |
|
|||||| | ||||| |||||| ||||||| || | ||| ||||| ||||||||||||| |||||||||||||| || ||||||| | ||||| ||| || |
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|
| T |
13308156 |
aaccatgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaagtaacatacaagaaaaggatgaagggtttattgaagaagatt |
13308255 |
T |
|
| Q |
425 |
gaagaactaagcatcctttgtagaatt |
451 |
Q |
| |
|
|| |||||||||| |||||| ||||| |
|
|
| T |
13308256 |
gacgaactaagcacgctttgtggaatt |
13308282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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