View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_24 (Length: 466)
Name: NF3710_high_24
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 8137108 - 8137548
Alignment:
| Q |
11 |
catagggtgaatatgtattgtgatgattaaacgacataactaactcattaaaaaatcatggcccattttcttgcatttatatagatgtcactacttcatc |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137108 |
catagggtcaatatgtattgtgatgattaaacgacataactaacccattaaaaaatcatggcccattttcttgcatttatatagatgtcactacttcatc |
8137207 |
T |
|
| Q |
111 |
tttagacatcacaattttcagccatgggagctatagctccttcccttctctatcttttttctatagctacccttttggctgttgtcactggaactgaacc |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137208 |
tttagacatcacaatttgcagccatgggagctataggtccttcccttctctatcttttttctctagctacccttttggctgttgtcactggaactgaacc |
8137307 |
T |
|
| Q |
211 |
nnnnnnngtagaaccaagtcaatatgcttcattcaataggagcctttttcctgatgattttctctttggaattggttcttctgcttaccaggttcatacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137308 |
aaaaaaagtagaaccaagtcaatatgcttcattcaataggagcctttttcctgatgattttctctttggaattggttcttctgcttaccaggttcatacc |
8137407 |
T |
|
| Q |
311 |
atcacatagtatattttattttgttacatggaccaccacatagatagcattagcaacaatgtattcaattactcatttccttgttaataaatattccaac |
410 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8137408 |
atcacatagtata-tttattttgttacatggaccaccacatagatagcattagcaacaatgtattcaattactcatttccttgttaatacatattccaac |
8137506 |
T |
|
| Q |
411 |
ataagggccagtttatttgcagtg-tttgctattattatttg |
451 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8137507 |
ataagggccagtttatttgcagtgttttgctattattatttg |
8137548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 310
Target Start/End: Original strand, 8161883 - 8162067
Alignment:
| Q |
129 |
cagccatgggagctatagctccttcccttctctatcttttttctatagctacccttttggctgttgtcactggaactgaaccnnnnnnngtagaaccaag |
228 |
Q |
| |
|
|||||||| ||||||| || || ||| ||||||||||||||| | ||||| ||||||||||||||||||||||||| | | || | ||||| |
|
|
| T |
8161883 |
cagccatgaaagctataagtcatttcctcctctatcttttttctctggctacacttttggctgttgtcactggaactgcatcacaacatgtgcatccaag |
8161982 |
T |
|
| Q |
229 |
tcaatatgct---tcattcaataggagcctttttcctgatgattttctctttggaattggttcttctgcttaccaggttcatacc |
310 |
Q |
| |
|
||| |||||| |||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8161983 |
tcactatgctgcttcattcaacaggaccctttttccttctgattttctctttggaatcggttcttctgcttaccaggttcatacc |
8162067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University