View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_25 (Length: 465)
Name: NF3710_high_25
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 2564251 - 2564676
Alignment:
| Q |
20 |
gaagttactctctacagattnnnnnnnctcctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgatggaatgagctg |
119 |
Q |
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| T |
2564251 |
gaagttactctctacagattaaaaaaacacctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgatggaatgagctg |
2564350 |
T |
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| Q |
120 |
aattagcatttgatttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcatt |
219 |
Q |
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| T |
2564351 |
aatta------------ttattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcatt |
2564438 |
T |
|
| Q |
220 |
ttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564439 |
ttctccaaaatcctaaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
2564538 |
T |
|
| Q |
320 |
tttgtacactaatttatgactc-taagacattaagcccatttctttattattttggttcataattattataactaaaaattgaatgtgtacataacatag |
418 |
Q |
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| T |
2564539 |
tttgtacactaatttatgactcttaagacatttagcccatttctttattattttggttcataattattataactaaaaattgaatgtgtacataacatag |
2564638 |
T |
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| Q |
419 |
gtggactacatactaggtaacaatcccatgatgatgtc |
456 |
Q |
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| T |
2564639 |
gtggactacatactaggtaacaatcccatgaagatgtc |
2564676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 132 - 319
Target Start/End: Original strand, 2574246 - 2574433
Alignment:
| Q |
132 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
231 |
Q |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
|
| Q |
232 |
ctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
319 |
Q |
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|||||||||| |||||||||||||| || ||||||||| || |||| | ||||||| |||| |||||||||||||| |||||||| |
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| T |
2574346 |
ttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
2574433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 2574502 - 2574570
Alignment:
| Q |
390 |
actaaaaattgaatgtgtacata--acataggtggactacatactaggtaacaatcccatgatgatgtc |
456 |
Q |
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| T |
2574502 |
actaaaagttgaatgtgtacatattacataggtggactacatactaggaaacaatcccatgaagatgtc |
2574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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