View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_33 (Length: 438)
Name: NF3710_high_33
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_33 |
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| [»] scaffold0039 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 9765137 - 9765439
Alignment:
| Q |
14 |
agagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatggtttattg |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765137 |
agagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacagttaaataatttcactttttcattttctagaattgtgttatggtttattg |
9765236 |
T |
|
| Q |
114 |
g-ttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacacttacaatttg |
212 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
9765237 |
gtttgaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgctcgaatccatttcacacttataatttg |
9765336 |
T |
|
| Q |
213 |
ctannnnnnnnnnaataaaaaggggtttctatttgctattgatgctgagnnnnnnnnctatagtagtgaaggattcatggtaaagtgatgcttaagtcaa |
312 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765337 |
ctattttttttttaataaaaaggggtttctatttgctattgatgctgagttttttttctatagtagtgaaggattcatggtaaagtgatgcttaagtcaa |
9765436 |
T |
|
| Q |
313 |
cat |
315 |
Q |
| |
|
||| |
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|
| T |
9765437 |
cat |
9765439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 9765623 - 9765714
Alignment:
| Q |
330 |
aattaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttatgatttatgacagtttctcaaagtaacctctaat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765623 |
aattaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttatgatttatgacagtttctcaaagtaacctctaat |
9765714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 43652404 - 43652097
Alignment:
| Q |
6 |
aggagcacagagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatg |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43652404 |
aggaacacagagataaacggtacaaaaaattaaatgatttattggtagaaaataaacagttaaatgatttcactttttcattttctagaattttgttatg |
43652305 |
T |
|
| Q |
106 |
gtttattgg-ttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacactt |
204 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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|
| T |
43652304 |
gtttattggtttgaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctatttgatgcgacggtgcccgaatccatttcacactt |
43652205 |
T |
|
| Q |
205 |
acaatttgctannnnnnnnnnaataaaaaggggtttctatttgctattgatgctgag-nnnnnnnnctatagtagtgaaggattcatggtaaagtgatgc |
303 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
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| T |
43652204 |
acaatttgcta---tttttttaataaaaaggggtttcaatttgctattgatggtgagtttttttttctatagcagtgaaggattcatggtaaagtgatgc |
43652108 |
T |
|
| Q |
304 |
ttaagtcaacat |
315 |
Q |
| |
|
||||||||||| |
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|
| T |
43652107 |
-taagtcaacat |
43652097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 43651886 - 43651796
Alignment:
| Q |
331 |
attaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttatgatttatgacagtttctcaaagtaacctctaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
43651886 |
attaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttattatttatgacagtttctcaaagtaacttctaat |
43651796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 23416405 - 23416479
Alignment:
| Q |
141 |
caaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacacttacaatttgcta |
215 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||| |||||| ||||||||| |
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|
| T |
23416405 |
caaatgatagatggagttgtgtcttactattcgatgcgacggtgcccgaatccatttcacacttttaatttgcta |
23416479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 41985636 - 41985706
Alignment:
| Q |
80 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgata |
149 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||| |||||| ||||| |||||| |||||||||||| |
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| T |
41985636 |
ttttcatattctaaaattctgttatggcttattggtttgaacttttgatttgttcatgaagacaaatgata |
41985706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 21115606 - 21115304
Alignment:
| Q |
6 |
aggagcacagagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatg |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
21115606 |
aggaacacatagataaacggtacaaaaaattaaatgatttattggtagaaaataaacagttaaatgatttcactttttcattttctagaatttggttatg |
21115507 |
T |
|
| Q |
106 |
gtttattggttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacactta |
205 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
21115506 |
gttt-------gaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctatttgatgcgacggtgcccgaatccatttcacactta |
21115414 |
T |
|
| Q |
206 |
caatttgctannnnnnnnnnaataaaaaggggtttctatttgctattgatgctgag-nnnnnnnnctatagtagtgaaggattcatggtaaagtgatgct |
304 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
21115413 |
caatttgctattttttttttaataaaaaggggtttcaatttgctattgatggtgagtttttttttctatagcagtgaaggattcatggtaaagtgatgc- |
21115315 |
T |
|
| Q |
305 |
taagtcaacat |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
21115314 |
taagtcaacat |
21115304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 21115095 - 21115005
Alignment:
| Q |
331 |
attaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttatgatttatgacagtttctcaaagtaacctctaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
21115095 |
attaatttttgatattttgtaccatcatgaattgttaatccaaattgcacacttttattatttatgacagtttctcaaagtaacttctaat |
21115005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 80746 - 80880
Alignment:
| Q |
80 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcg |
178 |
Q |
| |
|
||||||| ||||| |||| |||||||| |||||||| |||||| ||||| |||||| |||||||||||| ||||| ||||||||||||||| ||||| |
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|
| T |
80746 |
ttttcatattctaaaattctgttatggcatattggtttgaacttttgatttgttcatgaagacaaatgatagatgga--attgtctttctattccatgcg |
80843 |
T |
|
| Q |
179 |
acagtgcccgaatccattttacacttacaatttgcta |
215 |
Q |
| |
|
| ||| |||||||||||| |||||| |||||||||| |
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|
| T |
80844 |
atggtgaccgaatccatttcacactttcaatttgcta |
80880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 80901 - 80933
Alignment:
| Q |
272 |
atagtagtgaaggattcatggtaaagtgatgct |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
80901 |
atagcagtgaaggattcatggtaaagtgatgct |
80933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 20024145 - 20024278
Alignment:
| Q |
68 |
aatgatttcactttttcattttctagaattgtgttatggtttattggttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttc |
167 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||| | ||||||| ||||| ||||||||||||| |||||||||| ||||||| | |||||| |
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| T |
20024145 |
aatgatttctctttttcattttctggaattttgatatagcttattgg---aactttcaatttcttcatgcaaacaaatgatagatggagttgtatctttc |
20024241 |
T |
|
| Q |
168 |
tattcgatgcgacagtgcccgaatccattttacactt |
204 |
Q |
| |
|
|||||||| || | |||||| | ||||| | |||||| |
|
|
| T |
20024242 |
tattcgatacggcggtgcccaagtccatctcacactt |
20024278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 14601865 - 14601965
Alignment:
| Q |
78 |
ctttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatg |
176 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| |||| ||| || |||| |||||| |||||||||||| ||| ||| |||||||| |||||||| |
|
|
| T |
14601865 |
ctttttcattttctagaattttgatatggcttatcggtttgaaatttcaatttgttcatggagacaaatgatagatgtagttgtgtctttcgattcgatg |
14601964 |
T |
|
| Q |
177 |
c |
177 |
Q |
| |
|
| |
|
|
| T |
14601965 |
c |
14601965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 19379172 - 19379242
Alignment:
| Q |
80 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgata |
149 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||| |||||| ||||| |||||| |||||||||||| |
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|
| T |
19379172 |
ttttcatattctaaaattctgttatggcttattggtttgaacttttgatttgttcatgaagacaaatgata |
19379242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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