View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_34 (Length: 437)
Name: NF3710_high_34
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 39132190 - 39132604
Alignment:
| Q |
15 |
agatggtagactcatttgtgcatattataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgag |
114 |
Q |
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| T |
39132190 |
agatggtagactaatttgtgcatattataacttggcctacaagaataaactattcgctctcttgcgataacacgcacataatgcaaaactgaactctgag |
39132289 |
T |
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| Q |
115 |
agcagttccatgaaaacaaactcatttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcttacacctgca |
214 |
Q |
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| T |
39132290 |
agcagttccatgaaaacaaactcatttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcatacacctgca |
39132389 |
T |
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| Q |
215 |
tgttagttgtaaataagttgattgtgaacttaggataaggcc-agtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttca |
313 |
Q |
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| T |
39132390 |
tgttagttgtaaataagttgattgtgaacttaggataaggccaagtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttca |
39132489 |
T |
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| Q |
314 |
gaatacaatctaatgtctgtggatctacttaaccgtgtaaaggtaaatagtattgatattggacctacaccatcatccaatgttcaaatgaattagaatt |
413 |
Q |
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| T |
39132490 |
gaatacaatctaatgtctgtggatctacttaaccgtgtaaaggtaactagtattgatattggacctacaccatcatccaatgttcaaataaattagaatt |
39132589 |
T |
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| Q |
414 |
aacatgattctctct |
428 |
Q |
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| T |
39132590 |
aacaggattctctct |
39132604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 39372284 - 39372416
Alignment:
| Q |
40 |
tataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactcat |
139 |
Q |
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| T |
39372284 |
tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactcca |
39372383 |
T |
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| Q |
140 |
ttgaaatcaagactcttgtttgtttttcttattta |
174 |
Q |
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| T |
39372384 |
ttgaaatcaaggtact--tttgtttttcttattta |
39372416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 39126317 - 39126359
Alignment:
| Q |
26 |
tcatttgtgcatattataacttggcctacaagaataaactatt |
68 |
Q |
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| T |
39126317 |
tcatttgtgcatataataacttgacctacaagaatcaactatt |
39126359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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