View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_38 (Length: 416)

Name: NF3710_high_38
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_38
NF3710_high_38
[»] chr4 (8 HSPs)
chr4 (165-268)||(24225436-24225539)
chr4 (6-97)||(24225617-24225708)
chr4 (1-85)||(24225663-24225747)
chr4 (6-85)||(16871050-16871132)
chr4 (16-85)||(16871086-16871156)
chr4 (6-56)||(16871045-16871097)
chr4 (6-81)||(16871125-16871208)
chr4 (6-54)||(16870899-16870947)
[»] chr8 (11 HSPs)
chr8 (21-85)||(20242249-20242313)
chr8 (21-85)||(20250847-20250911)
chr8 (6-53)||(20242247-20242294)
chr8 (6-69)||(20242324-20242387)
chr8 (6-69)||(20250773-20250836)
chr8 (6-53)||(20250866-20250913)
chr8 (25-59)||(16579198-16579232)
chr8 (25-59)||(16583943-16583977)
chr8 (9-38)||(20242321-20242350)
chr8 (9-38)||(20250810-20250839)
chr8 (21-57)||(16579280-16579316)
[»] chr7 (18 HSPs)
chr7 (21-85)||(44338572-44338636)
chr7 (1-74)||(24486930-24487003)
chr7 (165-250)||(21813799-21813880)
chr7 (7-69)||(21813953-21814016)
chr7 (24-86)||(6532147-6532207)
chr7 (9-54)||(26403127-26403172)
chr7 (6-54)||(46963689-46963737)
chr7 (6-87)||(6532114-6532191)
chr7 (13-85)||(21813972-21814040)
chr7 (6-53)||(44338570-44338617)
chr7 (6-69)||(44338647-44338710)
chr7 (6-85)||(46963648-46963734)
chr7 (47-85)||(24486942-24486980)
chr7 (6-72)||(24486969-24487035)
chr7 (31-87)||(8574427-8574481)
chr7 (9-38)||(44338644-44338673)
chr7 (6-87)||(11828470-11828553)
chr7 (6-56)||(46963534-46963588)
[»] chr6 (10 HSPs)
chr6 (9-81)||(22860818-22860893)
chr6 (9-85)||(9291150-9291227)
chr6 (6-81)||(9291111-9291188)
chr6 (6-69)||(22860760-22860825)
chr6 (6-81)||(22860927-22861003)
chr6 (6-85)||(22860778-22860861)
chr6 (6-52)||(9291181-9291228)
chr6 (165-240)||(13097858-13097932)
chr6 (6-69)||(22860906-22860968)
chr6 (21-54)||(18984142-18984175)
[»] chr2 (12 HSPs)
chr2 (6-85)||(38583938-38584017)
chr2 (6-69)||(38583971-38584035)
chr2 (1-87)||(29409338-29409426)
chr2 (6-81)||(32290694-32290771)
chr2 (32-85)||(38583930-38583982)
chr2 (6-85)||(38584006-38584091)
chr2 (6-62)||(38584045-38584102)
chr2 (6-54)||(8986368-8986416)
chr2 (6-56)||(8986514-8986568)
chr2 (10-81)||(32290800-32290868)
chr2 (8-85)||(8986371-8986455)
chr2 (165-225)||(38584143-38584203)
[»] chr5 (11 HSPs)
chr5 (2-73)||(27314808-27314879)
chr5 (13-81)||(24137194-24137258)
chr5 (6-64)||(24137177-24137235)
chr5 (7-56)||(9511927-9511976)
chr5 (6-63)||(11335334-11335391)
chr5 (165-268)||(9511740-9511838)
chr5 (9-78)||(9512013-9512082)
chr5 (30-85)||(11335324-11335379)
chr5 (165-202)||(24136915-24136952)
chr5 (7-56)||(24137122-24137171)
chr5 (41-85)||(9511932-9511976)
[»] chr1 (15 HSPs)
chr1 (165-250)||(19825124-19825208)
chr1 (1-85)||(11993223-11993306)
chr1 (9-87)||(12177171-12177249)
chr1 (9-84)||(15629862-15629938)
chr1 (6-81)||(15629822-15629900)
chr1 (27-85)||(12177155-12177213)
chr1 (6-85)||(3775108-3775183)
chr1 (6-69)||(9168209-9168273)
chr1 (3-85)||(12177095-12177179)
chr1 (37-85)||(3775073-3775119)
chr1 (22-82)||(9168191-9168252)
chr1 (16-56)||(15629903-15629944)
chr1 (1-61)||(370460-370520)
chr1 (16-72)||(9168295-9168351)
chr1 (165-217)||(15630051-15630103)
[»] chr3 (3 HSPs)
chr3 (6-56)||(42530811-42530861)
chr3 (30-85)||(42530816-42530871)
chr3 (12-65)||(42530879-42530933)
[»] scaffold0499 (1 HSPs)
scaffold0499 (165-240)||(7304-7378)
[»] scaffold0025 (1 HSPs)
scaffold0025 (174-240)||(154938-155004)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-54)||(14716-14749)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 24225539 - 24225436
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtgagcattatctttaactcactaaaca 264  Q
    |||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24225539 ttgtaagcactcgattcaccaaacaaccaaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtgagcattatatttaactcactaaaca 24225440  T
Q  265 acca 268  Q
    ||||    
T  24225439 acca 24225436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 24225708 - 24225617
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaataatgagaaatg 97  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| || ||||||| |||| |||||||||||| ||||||||||||||    
T  24225708 cagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgcaatgaatcagaagaatgaataatgagaaatg 24225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24225747 - 24225663
Alignment:
Q  1 ccaaacagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |  | |||| |||| |||||||||||||||    
T  24225747 ccaaacagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaa 24225663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 16871132 - 16871050
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaa-gggagagaagtacaat-caatcagaagaatcaa 85  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||||||    
T  16871132 cagaagaaccaaaagtgggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaa 16871050  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 16871156 - 16871086
Alignment:
Q  16 aaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat-caatcagaagaatcaa 85  Q
    |||||||||||||||||||| ||||||||||| |||||| | ||||||| |||| ||||||||||||||||    
T  16871156 aaaagggggagaagtgcaatcaatcagaagaaccaaaagtgggagaagtgcaatgcaatcagaagaatcaa 16871086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 16871097 - 16871045
Alignment:
Q  6 cagaagaatcaaaaggggg-agaagtgcaatg-aatcagaagaatcaaaaggg 56  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  16871097 cagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggg 16871045  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 16871208 - 16871125
Alignment:
Q  6 cagaagaatcaaaagggg-gagaagtgcaatg-----aatcagaagaatc--aaaagggagagaagtacaatcaatcagaagaa 81  Q
    |||||||||||||||||| |||||||||||||     ||||||| |||||  ||||||| ||||||| ||||||||||||||||    
T  16871208 cagaagaatcaaaaggggagagaagtgcaatgcaatcaatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaa 16871125  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 16870947 - 16870899
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    |||||||| ||| ||| |||||| |||||| ||||||||||||||||||    
T  16870947 cagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaag 16870899  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 20242313 - 20242249
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  20242313 ggggagaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaa 20242249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 20250847 - 20250911
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  20250847 ggggagaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaa 20250911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 20242294 - 20242247
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaa 53  Q
    ||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  20242294 cagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 20242387 - 20242324
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||||| | | ||||| ||||||||| ||||| |||||||||||||| ||||||| ||||    
T  20242387 cagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgcaat 20242324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 20250773 - 20250836
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||||| | | ||||| ||||||||| ||||| |||||||||||||| ||||||| ||||    
T  20250773 cagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgcaat 20250836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 20250866 - 20250913
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaa 53  Q
    ||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  20250866 cagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 20250913  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 16579198 - 16579232
Alignment:
Q  25 agaagtgcaatgaatcagaagaatcaaaagggaga 59  Q
    ||||||||||| |||||||||||||||||||||||    
T  16579198 agaagtgcaataaatcagaagaatcaaaagggaga 16579232  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 16583943 - 16583977
Alignment:
Q  25 agaagtgcaatgaatcagaagaatcaaaagggaga 59  Q
    ||||||||||| |||||||||||||||||||||||    
T  16583943 agaagtgcaataaatcagaagaatcaaaagggaga 16583977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 20242350 - 20242321
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaa 38  Q
    ||||||||||||||||||||||||||||||    
T  20242350 aagaatcaaaagggggagaagtgcaatgaa 20242321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 20250810 - 20250839
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaa 38  Q
    ||||||||||||||||||||||||||||||    
T  20250810 aagaatcaaaagggggagaagtgcaatgaa 20250839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 16579280 - 16579316
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaaggga 57  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  16579280 ggggagaagtgcaatcaataagaagaatcaaaaggga 16579316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 44338636 - 44338572
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  44338636 ggggagaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaa 44338572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24486930 - 24487003
Alignment:
Q  1 ccaaacagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatc 74  Q
    ||||||||||  ||||||||||| |||||| |||| ||||||||||||||||||| ||| |||| |||||||||    
T  24486930 ccaaacagaatcatcaaaaggggtagaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatc 24487003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 21813880 - 21813799
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtgagcattatctt 250  Q
    |||||||||||||||||||||||||||  || |||||| |||||| |||||    |||||||||||||||||||||| | ||||||    
T  21813880 ttgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcacc----aaacaaataaaccaattgtgaggaatatctt 21813799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 21814016 - 21813953
Alignment:
Q  7 agaagaatcaaaagggggagaagtgcaatgaatcagaagaatc-aaaagggagagaagtacaat 69  Q
    |||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||    
T  21814016 agaacaatcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgcaat 21813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 6532207 - 6532147
Alignment:
Q  24 gagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaat 86  Q
    |||||||||| | ||||||||||||||| |||  ||||||| |||||||||||||||||||||    
T  6532207 gagaagtgcagtcaatcagaagaatcaatagg--gagaagtgcaatcaatcagaagaatcaat 6532147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 26403172 - 26403127
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    |||||||||||||||||||||||| || |||||||| |||||||||    
T  26403172 aagaatcaaaagggggagaagtgctataaatcagaataatcaaaag 26403127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 46963689 - 46963737
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    |||||||| ||| |||||||||| |||||| ||||||||||||||||||    
T  46963689 cagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 46963737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 6532191 - 6532114
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaata 87  Q
    |||||||||||| ||||  ||||||||||| |||||||||||||  || || ||||||| |||||||| ||||||| |||||    
T  6532191 cagaagaatcaataggg--agaagtgcaatcaatcagaagaatc--aatggggagaagttcaatcaatgagaagaaccaata 6532114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 21814040 - 21813972
Alignment:
Q  13 atcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||||| |||||||||||||| |    ||| ||||||||||| ||||| |||||| |||||||||||||||    
T  21814040 atcaaaagtgggagaagtgcaatta----gaacaatcaaaagggggagaaatacaatgaatcagaagaatcaa 21813972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 44338617 - 44338570
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaa 53  Q
    ||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  44338617 cagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 44338710 - 44338647
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||||| | | ||||| ||||||||| ||||| |||||||||||||| ||||||| ||||    
T  44338710 cagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgcaat 44338647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 46963648 - 46963734
Alignment:
Q  6 cagaagaatcaaaaggg-ggagaagtgcaatg------aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||||||| | ||||||||||||||      ||||||||||| ||| |||| ||||| | ||||||||||||||||||||    
T  46963648 cagaagaatcaaaagagtggagaagtgcaatgcaatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaa 46963734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 24486942 - 24486980
Alignment:
Q  47 atcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  24486942 atcaaaaggggtagaagtacaatcaatcagaagaatcaa 24486980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 24486969 - 24487035
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaa 72  Q
    ||||||||||||||||  || ||||||||| |||| | ||||| ||||| ||||||||| |||||||    
T  24486969 cagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaatcaa 24487035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 8574481 - 8574427
Alignment:
Q  31 gcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaata 87  Q
    ||||| || ||||| ||||||||||||||||||  |||||||| |||||||||||||    
T  8574481 gcaatcaaacagaataatcaaaagggagagaag--caatcaattagaagaatcaata 8574427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 44338673 - 44338644
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaa 38  Q
    ||||||||||||||||||||||||||||||    
T  44338673 aagaatcaaaagggggagaagtgcaatgaa 44338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 11828470 - 11828553
Alignment:
Q  6 cagaagaatcaaaagggggagaagtg---caatgaatcagaagaatcaaaaggga-gagaagtacaatcaatcagaagaatcaata 87  Q
    ||||||||||| |||||| ||||||    |||| || |||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  11828470 cagaagaatcataaggggaagaagtaatccaatcaaccagaagaatcaaaagggaggagaag--caatcaaccagaagaatcaata 11828553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 46963534 - 46963588
Alignment:
Q  6 cagaagaatcaaaa---gggggagaagtgcaatg-aatcagaagaatcaaaaggg 56  Q
    ||||||||||||||   ||||||||||||||||| |||| |||||||||||||||    
T  46963534 cagaagaatcaaaaaaggggggagaagtgcaatgcaatcggaagaatcaaaaggg 46963588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 22860893 - 22860818
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaat-gaatcagaagaatcaaaa--gggagagaagtacaatcaatcagaagaa 81  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  22860893 aagaatcaatagggggagaagtgcaatggaatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaa 22860818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 9291150 - 9291227
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaa-gggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||||||| | |||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||    
T  9291150 aagaatcaaaggagggagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgcaatcaatcagaagaatcaa 9291227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 9291111 - 9291188
Alignment:
Q  6 cagaagaatcaaaa-gggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaa 81  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||| | | ||||||| ||||||||||||||||    
T  9291111 cagaagaatcaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcagaagaa 9291188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 22860825 - 22860760
Alignment:
Q  6 cagaagaatcaaaaggggg-agaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  22860825 cagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaaaagggagagaagtgcaat 22860760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 22861003 - 22860927
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaa 81  Q
    |||||||| |||||||||||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||| ||||||    
T  22861003 cagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaa 22860927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 22860861 - 22860778
Alignment:
Q  6 cagaagaatcaaaagggggaga--agtgcaatgaatcagaagaatcaaaa-gggagagaagtacaat-caatcagaagaatcaa 85  Q
    |||||||||||||| |||||||  |||||||| ||||||||||| ||||| ||| ||||||| |||| ||||||||||||||||    
T  22860861 cagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaa 22860778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 9291181 - 9291228
Alignment:
Q  6 cagaagaatcaaaagggg-gagaagtgcaatgaatcagaagaatcaaa 52  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  9291181 cagaagaaccaaaaggggggagaagtgcaatcaatcagaagaatcaaa 9291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 13097932 - 13097858
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtga 240  Q
    |||||||||||||||||| ||||||||  | ||||||| | |||| |||||||| ||| ||| |||||||||||||    
T  13097932 ttgtgagcactcgactcatcaaacaaccaatttgtgagcatttga-tcaccaaccaaagaaacaaaccaattgtga 13097858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 22860968 - 22860906
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||| |||||||||||||| |||||| |||| |||||| |||||||| ||||||| ||||    
T  22860968 cagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaaggg-gagaagtgcaat 22860906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 18984175 - 18984142
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  18984175 ggggagaagtgcaatcaatcagaagaatcaaaag 18984142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 38583938 - 38584017
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat-caatcagaagaatcaa 85  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||    
T  38583938 cagaagaatcaaa-gggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaa 38584017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 38583971 - 38584035
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaat 69  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||| ||||    
T  38583971 cagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgcaat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29409338 - 29409426
Alignment:
Q  1 ccaaacagaagaatcaaaagggggagaagtgcaatg-----aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaata 87  Q
    ||||||||||||||||| ||||  ||||||||||||     ||||||||||||||| |||| |||| || ||||||||||||||||||||||    
T  29409338 ccaaacagaagaatcaataggg--agaagtgcaatgcaatcaatcagaagaatcaacaggg-gagacgtgcaatcaatcagaagaatcaata 29409426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 32290771 - 32290694
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaat-caatcagaagaa 81  Q
    |||||||| |||||||||||||||||||||| ||||||||| | |||||  | ||||||| |||| ||||||||||||    
T  32290771 cagaagaaccaaaagggggagaagtgcaatgcaatcagaaggaccaaaaatgggagaagtgcaatgcaatcagaagaa 32290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 38583930 - 38583982
Alignment:
Q  32 caatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  38583930 caatcaatcagaagaatc-aaagggggagaagtgcaatcaatcagaagaatcaa 38583982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 38584006 - 38584091
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-----aatcagaagaatcaaaagggagagaagtacaat-caatcagaagaatcaa 85  Q
    |||||||||||||||||||||||||||||||     | |||||| ||||||||||| ||||||| | || |||| |||||||||||    
T  38584006 cagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaa 38584091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 38584045 - 38584102
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaagggagagaa 62  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||||||||| |||||    
T  38584045 cagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaa 38584102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 8986416 - 8986368
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    |||||||| ||| |||||||||| |||||| ||||||||||||||||||    
T  8986416 cagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 8986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 8986568 - 8986514
Alignment:
Q  6 cagaagaatcaaaa---gggggagaagtgcaatg-aatcagaagaatcaaaaggg 56  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  8986568 cagaagaatcaaaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggg 8986514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 32290868 - 32290800
Alignment:
Q  10 agaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaaggg-agagaagtacaatcaatcagaagaa 81  Q
    |||| |||||| ||||||||||||||    ||||||||||||||||| |||||| | ||||||||||||||||    
T  32290868 agaagcaaaagtgggagaagtgcaat----cagaagaatcaaaaggggagagaaatgcaatcaatcagaagaa 32290800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 8986455 - 8986371
Alignment:
Q  8 gaagaatcaaaaggg-ggagaagtgcaatg------aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||||| | ||||||||||||||      ||||||||||| ||| |||| ||||| | ||||||||||||||||||||    
T  8986455 gaagaatcaaaagagtggagaagtgcaatgcaatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaa 8986371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 38584143 - 38584203
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaa 225  Q
    |||||||||||  ||||||||||| ||  ||||||||| |||||| |||||||| ||||||    
T  38584143 ttgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaa 38584203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 27314879 - 27314808
Alignment:
Q  2 caaacagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaat 73  Q
    ||||| |||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||| |||||||    
T  27314879 caaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaagggagagaagtataatcaat 27314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 24137258 - 24137194
Alignment:
Q  13 atcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaa 81  Q
    |||||||| ||||||||||||||    ||||||||||||||||| ||||| ||||||||||||||||||    
T  24137258 atcaaaagtgggagaagtgcaat----cagaagaatcaaaagggggagaaatacaatcaatcagaagaa 24137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 24137235 - 24137177
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagt 64  Q
    ||||||||||||||||||||||| | |||| ||||||||||| |||||||| |||||||    
T  24137235 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagt 24137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 9511976 - 9511927
Alignment:
Q  7 agaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaaggg 56  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  9511976 agaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaaggg 9511927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 11335334 - 11335391
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaag 63  Q
    |||||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  11335334 cagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaag 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 9511838 - 9511740
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtgagcattatctttaactcactaaaca 264  Q
    ||||||||||||||||||||||||||| ||| |||||| ||| || |||||    ||||||| |||| ||||||||| | |||| |||||||||  ||||    
T  9511838 ttgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcacc----aaacaaacaaacgaattgtgaggactatc-ttaactcacctaaca 9511744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 9512082 - 9512013
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaa 78  Q
    |||||||||||||||||||| |||||| ||| ||||||| |||||    ||||||| |||||||||||||    
T  9512082 aagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaacaaggagaagtgcaatcaatcagaa 9512013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 11335324 - 11335379
Alignment:
Q  30 tgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||| ||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  11335324 tgcaatcaatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaa 11335379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 24136952 - 24136915
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgag 202  Q
    |||||||||||||||||||||||||||  |||||||||    
T  24136952 ttgtgagcactcgactcaccaaacaaccaaattgtgag 24136915  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24137171 - 24137122
Alignment:
Q  7 agaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaaggg 56  Q
    ||||||| |||||||||||||||||||||  || ||||||| ||||||||    
T  24137171 agaagaaccaaaagggggagaagtgcaatctattagaagaaccaaaaggg 24137122  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 9511976 - 9511932
Alignment:
Q  41 agaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||||| | || ||||||| ||||||||||||||||||||    
T  9511976 agaagaatcaatatggggagaagtgcaatcaatcagaagaatcaa 9511932  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 19825124 - 19825208
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtgagcattatctt 250  Q
    ||||||||||||||||| |||||||||  ||||||||| |||| | |||||||| ||||||| |||| ||||||||||||||||||    
T  19825124 ttgtgagcactcgactcgccaaacaaccaaattgtgagcactt-actcaccaaccaaacaaacaaacaaattgtgagcattatctt 19825208  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11993306 - 11993223
Alignment:
Q  1 ccaaacagaagaatcaaaaggggg-agaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||| |||||||||||||||||| ||||||| ||| ||||||||||||||| |  ||||||||| |||| ||| |||||||||||    
T  11993306 ccaaagagaagaatcaaaaggggggagaagtgaaatcaatcagaagaatcaata--gagagaagtccaattaattagaagaatcaa 11993223  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 12177171 - 12177249
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaata 87  Q
    |||||||||||||   ||||||||||| |||||||| ||||||||||| |||||||  |||||||||  ||||||||||    
T  12177171 aagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtgaaatcaatcaagagaatcaata 12177249  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 15629862 - 15629938
Alignment:
Q  9 aagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat-caatcagaagaatca 84  Q
    |||||||||| | |||||||||||||| ||||| |||||  ||||||| ||||||| |||| |||||||||||||||    
T  15629862 aagaatcaaaggagggagaagtgcaatcaatcaaaagaacaaaaagggggagaagtgcaatgcaatcagaagaatca 15629938  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 15629822 - 15629900
Alignment:
Q  6 cagaagaatcaaaa--gggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaa 81  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||||| | | ||||||| |||||||||| |||||    
T  15629822 cagaagaatcaaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaaaagaa 15629900  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 12177155 - 12177213
Alignment:
Q  27 aagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    ||||||||| ||||| ||||||||||||| | |||||| ||||||||||||| ||||||    
T  12177155 aagtgcaatcaatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaa 12177213  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 3775108 - 3775183
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||||||||||| ||||||||  ||||| ||||| |||||||||||||  ||||||  |||||||||| |||||||||    
T  3775108 cagaagaatcaaaatggggagaa--gcaatcaatcaaaagaatcaaaaggaggagaag--caatcaatcaaaagaatcaa 3775183  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 9168209 - 9168273
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatg-aatcagaagaatcaaaagggagagaagtacaat 69  Q
    |||||||||||||||| |||||||||||||| ||| |||||||| ||||||| | ||||| ||||    
T  9168209 cagaagaatcaaaaggaggagaagtgcaatgcaataagaagaatgaaaagggggggaagtgcaat 9168273  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 12177095 - 12177179
Alignment:
Q  3 aaacagaagaatcaaaaggggga-gaagtgcaatgaatcagaagaatcaaa-agggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||| ||||||||||| |||| |||||||||| |||||||||||| |||  |||| | |||| |||||||||| |||||||||    
T  12177095 aaacaggagaatcaaaagtgggaagaagtgcaatcaatcagaagaataaaatggggacataagtgcaatcaatcataagaatcaa 12177179  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 3775073 - 3775119
Alignment:
Q  37 aatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||||||||||||||| |||||||  |||||| ||||||||||||||    
T  3775073 aatcagaagaatcaaaagagagagaa--acaatcgatcagaagaatcaa 3775119  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 9168191 - 9168252
Alignment:
Q  22 gggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaat-caatcagaagaat 82  Q
    ||||||||||||||  ||||||||||||||||||  ||||||| |||| |||| ||||||||    
T  9168191 gggagaagtgcaatcgatcagaagaatcaaaaggaggagaagtgcaatgcaataagaagaat 9168252  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 15629903 - 15629944
Alignment:
Q  16 aaaagggggagaagtgcaatg-aatcagaagaatcaaaaggg 56  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  15629903 aaaagggggagaagtgcaatgcaatcagaagaatcataaggg 15629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 370520 - 370460
Alignment:
Q  1 ccaaacagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaagggagaga 61  Q
    ||||||| || |||||||||| | ||||||||||| ||||| |||||| |||||| |||||    
T  370520 ccaaacataataatcaaaaggagaagaagtgcaatcaatcaaaagaataaaaaggaagaga 370460  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 9168295 - 9168351
Alignment:
Q  16 aaaagggggagaagtgcaatgaatcagaagaatcaaaagggagagaagtacaatcaa 72  Q
    |||| ||||||||||||||||| |||||||||  || |||| ||||||| |||||||    
T  9168295 aaaaaggggagaagtgcaatgagtcagaagaaataatagggggagaagtgcaatcaa 9168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 15630051 - 15630103
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaa 217  Q
    |||||||||||||||||||||||||||  || |||||| ||| || |||||||    
T  15630051 ttgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaa 15630103  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 42530861 - 42530811
Alignment:
Q  6 cagaagaatcaaaagggggagaagtgcaatgaatcagaagaatcaaaaggg 56  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  42530861 cagaagaatcaaaaggggaagaagtgcaatcaatcagaagaatcaaaaggg 42530811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 42530871 - 42530816
Alignment:
Q  30 tgcaatgaatcagaagaatcaaaagggagagaagtacaatcaatcagaagaatcaa 85  Q
    |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  42530871 tgcaatcaatcagaagaatcaaaaggggaagaagtgcaatcaatcagaagaatcaa 42530816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 42530933 - 42530879
Alignment:
Q  12 aatcaaaaggggg-agaagtgcaatgaatcagaagaatcaaaagggagagaagta 65  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||| | ||||||||    
T  42530933 aatcaaaaggggggagaagtgcaatcaatcagaagaaccaaaagagggagaagta 42530879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 7304 - 7378
Alignment:
Q  165 ttgtgagcactcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtga 240  Q
    |||||||||||||||||||||||||||  | ||||||| | |||| |||||||| ||| ||| |||||||||||||    
T  7304 ttgtgagcactcgactcaccaaacaaccaatttgtgagcatttga-tcaccaaccaaagaaacaaaccaattgtga 7378  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 154938 - 155004
Alignment:
Q  174 ctcgactcaccaaacaactgaattgtgagtacttgagtcaccaacaaaacaaataaaccaattgtga 240  Q
    ||||||||||||||||||  ||||||||| | |||| | |||||| ||||||| |||||||||||||    
T  154938 ctcgactcaccaaacaaccaaattgtgagaatttgatttaccaaccaaacaaacaaaccaattgtga 155004  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 14716 - 14749
Alignment:
Q  21 ggggagaagtgcaatgaatcagaagaatcaaaag 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  14716 ggggagaagtgcaatcaatcagaagaatcaaaag 14749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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