View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_39 (Length: 415)
Name: NF3710_high_39
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 42813576 - 42813168
Alignment:
| Q |
1 |
cattgtacaccgacttgtattcaaatcttgtagaccatatatagtctgttatttatgaaagactagtttagctaaaatgtcaaggcagacctatttatat |
100 |
Q |
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| T |
42813576 |
cattgtacaccgacttgtattcaaatcttgtagaccatatatagtctgttatttatgaaagactagtttagctaaaatgtcaaggcagacctatttatat |
42813477 |
T |
|
| Q |
101 |
tgactagctatcaatatcatttatcaacatattcaacacata---------gtccattggtcaaatattttgttgcttacttagttgtcatcttccaaac |
191 |
Q |
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| T |
42813476 |
tgactagctatcaatatcatttatcaacatattcaacacatacaccacatagtccattggttaaatattttgttgcttacttagttgtcatcttccaaac |
42813377 |
T |
|
| Q |
192 |
tgttagccattggttttttgtcttaaccctctggttcttagaagaaatgaattccaataatcccgagttcaatcgaggtaagtaaagtctaattatgaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42813376 |
tgttagccattggttttttgtcttaaccctctggttcttagaagaaataaatcccgataatcccgagttcgatcgaggtaagtaaagtctaattatgaat |
42813277 |
T |
|
| Q |
292 |
-tgttctagttaaaatttaaactcgaatacttctgattggttcagctattgtgatttgactagagaagaataaataagaagacgaggtcacgaacaagtg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42813276 |
ctgttctagttaaaatttaaactcgaatacttctgattggttcagctattgtgatttgactagagaagaataaataagaagacgaggtcatgaacaagtg |
42813177 |
T |
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| Q |
391 |
ttgtgttga |
399 |
Q |
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||||||||| |
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| T |
42813176 |
ttgtgttga |
42813168 |
T |
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