View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_4 (Length: 715)
Name: NF3710_high_4
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 10320009 - 10320512
Alignment:
| Q |
19 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| || |||| |
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|
| T |
10320009 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatctgacaggcctgtacaatcagattttgcacaatttgga |
10320108 |
T |
|
| Q |
119 |
ttaaccacttcaaggctggattcaatgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcagggccctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10320109 |
ttaaccacttcaaggctggattcaatgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcagggccctc |
10320208 |
T |
|
| Q |
219 |
gga---------------accctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10320209 |
ggactcctctggctctgaaccctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
10320308 |
T |
|
| Q |
304 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10320309 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaaaaaacttgtatggttctgctttgttttggaaa |
10320408 |
T |
|
| Q |
404 |
tgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattactgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacat |
502 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10320409 |
tgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattactgtaaattaaatttcatggtttcgttcactcttaattaatttgattcaacat |
10320508 |
T |
|
| Q |
503 |
ttga |
506 |
Q |
| |
|
|||| |
|
|
| T |
10320509 |
ttga |
10320512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 10337125 - 10337628
Alignment:
| Q |
19 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| || |||| |
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|
| T |
10337125 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatctgacaggcctgtacaatcagattttgcacaatttgga |
10337224 |
T |
|
| Q |
119 |
ttaaccacttcaaggctggattcaatgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcagggccctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10337225 |
ttaaccacttcaaggctggattcaatgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcaaggccctc |
10337324 |
T |
|
| Q |
219 |
gga---------------accctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337325 |
ggactcctctggctctgaaccctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
10337424 |
T |
|
| Q |
304 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10337425 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaaaaaacttgtatggttctgctttgttttggaaa |
10337524 |
T |
|
| Q |
404 |
tgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattactgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacat |
502 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337525 |
tgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattactctaaattaaatttcatggtttcgttcactcttaattaatttgattcaacat |
10337624 |
T |
|
| Q |
503 |
ttga |
506 |
Q |
| |
|
|||| |
|
|
| T |
10337625 |
ttga |
10337628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 10299577 - 10300080
Alignment:
| Q |
19 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| || |||| |
|
|
| T |
10299577 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatctgacatgcctgtacaatcagattttgcacaatttgga |
10299676 |
T |
|
| Q |
119 |
ttaaccacttcaaggctggattcaatgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcagggccctc |
218 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299677 |
ttaaccacttcaaggctgcagtcattgaggcatcggagtctgaaggatattatccagtttgaatcaggttcatcacatgcatctagctctcagggccctc |
10299776 |
T |
|
| Q |
219 |
gga---------------accctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299777 |
ggactcctctggctctgaaccctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttac |
10299876 |
T |
|
| Q |
304 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10299877 |
gtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaaaaagcttgtatggttctgctttgttttggaaa |
10299976 |
T |
|
| Q |
404 |
tgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattactgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacat |
502 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299977 |
tgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattactctaaattaaatttcatggtttcgttcactcttaattaatttgattcaacat |
10300076 |
T |
|
| Q |
503 |
ttga |
506 |
Q |
| |
|
|||| |
|
|
| T |
10300077 |
ttga |
10300080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 565 - 696
Target Start/End: Original strand, 10300083 - 10300214
Alignment:
| Q |
565 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
664 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10300083 |
ctacatggtaataaggatattcttaaatagcaagaagagattgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
10300182 |
T |
|
| Q |
665 |
atgtataaatatttacagcataaactatgatt |
696 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
10300183 |
atgtataaatatttacagcatagactatgatt |
10300214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 565 - 696
Target Start/End: Original strand, 10337631 - 10337762
Alignment:
| Q |
565 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
664 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10337631 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattccttctttctcaaattc |
10337730 |
T |
|
| Q |
665 |
atgtataaatatttacagcataaactatgatt |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10337731 |
atgtataaatatttacagcataaactatgatt |
10337762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 565 - 696
Target Start/End: Original strand, 10320515 - 10320650
Alignment:
| Q |
565 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
664 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10320515 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctacctagcattcctcttttctcaaattc |
10320614 |
T |
|
| Q |
665 |
atgtataa----atatttacagcataaactatgatt |
696 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |
|
|
| T |
10320615 |
atgtataaatatatatatacagcataaactatgatt |
10320650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 35634839 - 35634769
Alignment:
| Q |
382 |
tggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattact |
452 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
35634839 |
tggttgtgccttgttttggaaatgaaagtgcaaaagtattctgaaatgctgtatactgtttttaaattact |
35634769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 35629275 - 35629167
Alignment:
| Q |
19 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctgga |
118 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||| |||| |||||||||||||| | |||||||||||| ||| || ||| | ||||||||| |||||| |
|
|
| T |
35629275 |
gttctttgacaaaacgtcgtttctgaggatgcccgtacataatttgtcctacaaaagctcatctgacagacctacaccatctgcttttgcacggtctgga |
35629176 |
T |
|
| Q |
119 |
ttaaccact |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
35629175 |
ttaaccact |
35629167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 35632440 - 35632337
Alignment:
| Q |
19 |
gttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctgga |
118 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| || |||| |||||||||||||| | |||||| |||||||||| | | ||| ||||||||||| |||||| |
|
|
| T |
35632440 |
gttcttggccaaaaagttgtttctgaggcggcgcgtacataatttgtcctacatatgctcatttgacacgcctctgccatctgattttgcacggtctgga |
35632341 |
T |
|
| Q |
119 |
ttaa |
122 |
Q |
| |
|
|||| |
|
|
| T |
35632340 |
ttaa |
35632337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 35631982 - 35631897
Alignment:
| Q |
365 |
tagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacatta |
450 |
Q |
| |
|
||||||| ||| |||| || |||||| |||||| |||||| ||||||||| ||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
35631982 |
tagcaaataaaattgtgtgcttctgccttgtttgtgaaatggaagttcaaatgtattttgaaatgctttatactatttttacatta |
35631897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 35635265 - 35635190
Alignment:
| Q |
319 |
aataagtgttctggagtttgtgacacaa-aggattatgtctga---tatgtagcaaacaaacttgtatggttctgc |
390 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
35635265 |
aataagtgtcctggagtttgtgacacaagagttttatgtctgaaactatatagcaaataaacttgtttggttctgc |
35635190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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