View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_43 (Length: 389)
Name: NF3710_high_43
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 77 - 377
Target Start/End: Complemental strand, 4313660 - 4313360
Alignment:
| Q |
77 |
ccaactcccaacaaaaatgagattacaaaaaatttgtggtacttttgttgaggtcatttttacagtagtaatcccaaaggaacaaaaatagtttatttcc |
176 |
Q |
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| T |
4313660 |
ccaactcccaacaaaaatgagattacaaaaaattggtggtacttttgttgaggtcatttgtacagtagtaatcccaaaggaacaaaaatagtttatttcc |
4313561 |
T |
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| Q |
177 |
atatt-gctttctcggtacaaaatgtcataattattagaacaacaaaccggacactaaagaaatctggtaaataaacgtacacaagaacacaacgattga |
275 |
Q |
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| T |
4313560 |
atatttgctgtctcggtacaaaatgtcataattattagaacaacaaaccggacactaaagaaatctggtaaataa-cgtacacaagaacacaacgattga |
4313462 |
T |
|
| Q |
276 |
tcacgtgcttgttgcactttcagctccactctctacgctacactgaagactcttccggttttcccacttaacaaggaatatgagccatagtgaacaataa |
375 |
Q |
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| T |
4313461 |
tcacatgcttgttgcactttcagctccactctctacgctacactgaagactcttccggtcttcccacttaacagggaatatgagccatagtgaacaataa |
4313362 |
T |
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| Q |
376 |
tg |
377 |
Q |
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|| |
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| T |
4313361 |
tg |
4313360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 4313850 - 4313803
Alignment:
| Q |
13 |
aatattagtgttttccaagcttaaatggatttcaatgtcccttttagg |
60 |
Q |
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| T |
4313850 |
aatattagtgttttccaagcttaaatggatttcaatgtcccttttagg |
4313803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 12666558 - 12666592
Alignment:
| Q |
244 |
taaataaacgtacacaagaacacaacgattgatca |
278 |
Q |
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| T |
12666558 |
taaataaacgcacacaagaacacaacgattgatca |
12666592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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