View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_45 (Length: 380)
Name: NF3710_high_45
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 33500273 - 33500648
Alignment:
| Q |
10 |
agcatagggagagtgaggaaaagaaaacgtctgagagtgacagttcaatatcatgagtttgttagtttagtagctatacgacattaacc----tgccaca |
105 |
Q |
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| T |
33500273 |
agcatagggagagtgaggaaaagaaaacgtttgagagtgacagttcaatatcatgagtttgttagtttagtagctatacgacattaaccaacctgccaca |
33500372 |
T |
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| Q |
106 |
tttagtattcgtacttttatcagctaaccagctcacacagatggactactttatagatgaaattaactgacattagcatttgtaacttaataagctaacc |
205 |
Q |
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| T |
33500373 |
tttagtattcgtacttttattagctaaccagctcacacagatggactactttatagaggaaattaactgacattagcatttgtaacttaataagctaacc |
33500472 |
T |
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| Q |
206 |
agtttatacaaattgactaacttccacaaatgtttctcaaattcagaaatcaatttgaaattgtgataacataccaaattcacaagctattatgaggcca |
305 |
Q |
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| T |
33500473 |
agtttatacaaattgactaacttccacaaatgtttctcaaattcagaaatcaatttgaaattgtgataacataccaaattcacaagctattatgaggcca |
33500572 |
T |
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| Q |
306 |
agtagtaaacctagacgatgcaaaacacaaaagtatatacatagcacatac-aaccttagttcagtggttgaggat |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
33500573 |
agtagtaaacctagacgatgcaaaacacaaaagtatataactagcacatacaaaccttagttcagtggttgaggat |
33500648 |
T |
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