View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_47 (Length: 366)
Name: NF3710_high_47
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 36671125 - 36670767
Alignment:
| Q |
1 |
tttgcttaaagatgcaacaaagtaccctctctttcgccaaaaatagtaagacccggactattaagttaataattttcattataaaacacacaaagacacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36671125 |
tttgcttaaagatgcaacaaagtaccctctctttcaccaaaaatagtaagacccggactattaagttaataattttcattataaaacaaacaaagacacc |
36671026 |
T |
|
| Q |
101 |
cctataaataatcgcactccatgcaatgcaataagaacacaacttctcaactctcatctaagatacatacagaacataacaatgagtttcaacaacacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36671025 |
cctataaataatcgcactccatgcaatgcaataagaacacaacttctcaactctcatctaagatacatacagaacataacaatgagtttcaacaacacat |
36670926 |
T |
|
| Q |
201 |
tttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaacttacctcaagattttgtcgatgcccacaacacagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36670925 |
tttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaacttacctcaagattttgtcgatgcccacaacacagc |
36670826 |
T |
|
| Q |
301 |
tcgtgcacaagttggcgttgcaaacattacttgggacaatacagttgctacctatgctt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36670825 |
tcgtgcacaagttggcgttgcaaacattacttgggacaacacagttgctacctatgctt |
36670767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 1772246 - 1772361
Alignment:
| Q |
136 |
aacacaacttctcaactctcatctaagatacatacagaacataacaatgagtttcaacaacacattttcactttttagcctcttcttgaccattttatcc |
235 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| | || | |||| |||||||||||||| |||||||| |||| |
|
|
| T |
1772246 |
aacacaatttctcaactctcatctaagaaacata----acataaccatgagtttctataattcgttttatctttttagcctctt---gaccatttgatcc |
1772338 |
T |
|
| Q |
236 |
ctttggttttcattctccaatgc |
258 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1772339 |
ttgtggttttcattctccaatgc |
1772361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University