View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_48 (Length: 366)
Name: NF3710_high_48
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 73 - 350
Target Start/End: Complemental strand, 2752983 - 2752706
Alignment:
| Q |
73 |
ttaaagtaccaaagattatgaacaaagagagtattagttatatcatgaaatgcttaataaaaacatgttatcaaatggaaaatgcttaatttcgcgaagg |
172 |
Q |
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| T |
2752983 |
ttaaagtaccaaagattatgaacaaagagagtattagttatatcatgaaatgcttaataaaaacatgttatcaaatggaaaatgcttaatttcgcgaagg |
2752884 |
T |
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| Q |
173 |
gacacttcacaattatttaatgagtgatacgatcctctcttggacactttaactcattcatttctcgcttcaaaccatgagtttagtgtctcggatgtta |
272 |
Q |
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| T |
2752883 |
gacacttcacaattatttaatgaatgatacgaccctctcttggacactttaactcattcatctctcgcttcaaaccatgagtttagtgtctcagatgtta |
2752784 |
T |
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| Q |
273 |
tttctcgccctctataagtctatacgtccatgagaccgcaactgcaactcatcgtcaatgattccatcacatgcttat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2752783 |
tttctcgccctctataagtctatacgtccatgagaccgcaactgcaactcatcgtcaatgattccatcacatgcttat |
2752706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 2753541 - 2753506
Alignment:
| Q |
14 |
atatatcactgatatatcatatatcatcttcaaata |
49 |
Q |
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| T |
2753541 |
atatatcactgatatatcatatatcatcttcaaata |
2753506 |
T |
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