View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_49 (Length: 357)
Name: NF3710_high_49
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 354
Target Start/End: Original strand, 41315101 - 41315447
Alignment:
| Q |
10 |
catcatcaacaatctggaatcatccaccatggaatgaacttgcttgtaagtactctacatacttcaattattacaccaactagctattttaattaatggt |
109 |
Q |
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| T |
41315101 |
catcatcaacaatctggaatcatccaccatggaatgaacttgcttgtaagtactctacatacttcaattattacaccaactagctattttaattaatggt |
41315200 |
T |
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| Q |
110 |
tg-ggtaattattgcgagattagtgataattaggtgaaacgagccgagttgagggggttggataactcaagtgacttgagttaagagataagagaatttg |
208 |
Q |
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| T |
41315201 |
tgtggtaattattgcgagattagtgataattaggtgaaacgagccgagttgagggggttggataactcaagtgacttgagttaagagataagagaatttg |
41315300 |
T |
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| Q |
209 |
agaacttgagttgaaactcgatgtaagataaagtctaataactaattagtaacattgaacgtttaaaaaatgagttgagccgaatatttaaagttgtttg |
308 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41315301 |
agaactcaagttgaaactcgatgtaagataaagtctaataactaattagtaacattgaacgtttaaaaaatgagttgagccgaatatttaaagttgtttg |
41315400 |
T |
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| Q |
309 |
atttaccgaag-nnnnnnnnnttgtttgagcttgagttgtttaaagt |
354 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
41315401 |
atttaccgaagaaaaaaaaaattgtttgagcttgagttgtttaaagt |
41315447 |
T |
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