View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_51 (Length: 349)
Name: NF3710_high_51
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 48307621 - 48307291
Alignment:
| Q |
20 |
gatccccaatataaaattggtaatcaagtgttcaaaaaagttgaaccgacatatttttgcttgacaaggatgatgcacgtggcattagagacaaaattga |
119 |
Q |
| |
|
||||||| | || |||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
48307621 |
gatccccgacattaaattggtgatcaagtgtataaaaaaattgaaccgacatatttttggttgacaaggatggtgcacgtggcattagagagaaaattga |
48307522 |
T |
|
| Q |
120 |
tggaaacaaaatggaatgagttccgtttaaatccctaaattcctagaattctaattcattccatcccttgttcaattccaaatccctaatcttattcctt |
219 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48307521 |
cggaaacaaaatggaatgaattcactttaaatccctaaattcctagaattctaattcattccatcccttgttcaattccaaatccctaatcttattcctt |
48307422 |
T |
|
| Q |
220 |
cttcttcctcttcattccatccaatcttccactaaataccaaaatcgaatcacatgataatggatatggtggtgcaaacactttcgta---aattggatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48307421 |
cttcttcctcttcattccatccaatcttccactaaataccaaaatcgaatcacatgataatgaatatggtggtgcaaacactttcgtaattaattggatt |
48307322 |
T |
|
| Q |
317 |
agcttttgttggtttagcctttgctactcct |
347 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |
|
|
| T |
48307321 |
agcttttgttggtttagcttttgcttctcct |
48307291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 4940477 - 4940555
Alignment:
| Q |
172 |
aattcattccatcccttgttcaattccaaatccctaatcttattccttcttcttcctcttcattccatccaatcttcca |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||||| || |||||| ||||| | |||| | |||||||||| |
|
|
| T |
4940477 |
aattcattccatcccttaatcaattccaaattcttaatcttactcattcttcctcctccttattcttttcaatcttcca |
4940555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 17240798 - 17240855
Alignment:
| Q |
113 |
aaattgatggaaacaaaatggaatgagttccgtttaaatccctaaattcctagaattc |
170 |
Q |
| |
|
|||||||| ||| |||||| || || |||| |||||||||||||||||||||||||| |
|
|
| T |
17240798 |
aaattgatagaatcaaaattgactgtgttcactttaaatccctaaattcctagaattc |
17240855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 17588882 - 17588923
Alignment:
| Q |
242 |
aatcttccactaaataccaaaatcgaatcacatgataatgga |
283 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
17588882 |
aatcttccattgaataccaaaatcgaatcacatgatgatgga |
17588923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University