View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_57 (Length: 329)
Name: NF3710_high_57
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 34007528 - 34007827
Alignment:
| Q |
12 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
111 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34007528 |
agcattggcataacagcgaacttcatttgtccgacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacacga |
34007627 |
T |
|
| Q |
112 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34007628 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacatgtatac |
34007727 |
T |
|
| Q |
212 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007728 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
34007827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 33999749 - 34000048
Alignment:
| Q |
12 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
111 |
Q |
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||||| |||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33999749 |
agcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
33999848 |
T |
|
| Q |
112 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
33999849 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacatgtatac |
33999948 |
T |
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| Q |
212 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33999949 |
actgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
34000048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 33994992 - 33995267
Alignment:
| Q |
18 |
ggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
117 |
Q |
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||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33994992 |
ggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
33995091 |
T |
|
| Q |
118 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatacgctgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33995092 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacatgtatacgctgtg |
33995191 |
T |
|
| Q |
218 |
tgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataa |
293 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
33995192 |
tgggaaacttgttgcatttggagcatcatatttgaaaactacacatggataaatatcaaatatcaacatcatataa |
33995267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 34003117 - 34003381
Alignment:
| Q |
12 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
111 |
Q |
| |
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||||| |||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34003117 |
agcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacacga |
34003216 |
T |
|
| Q |
112 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
34003217 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacatgtatac |
34003316 |
T |
|
| Q |
212 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaa |
276 |
Q |
| |
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||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34003317 |
gctgtgtgggaaactcgtcgcatttggagcatcatatttgaaaactacacatgcataaatatcaa |
34003381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 33989002 - 33989253
Alignment:
| Q |
18 |
ggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
117 |
Q |
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||||||| ||| |||||||||||||| | |||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
33989002 |
ggcataatagcaaacttcatttgtccaacattgcaatgcaacctatttttctcaccacatgcaaagtaatagggcttccacttgtttaacacgaacttga |
33989101 |
T |
|
| Q |
118 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatacgctgtg |
217 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||| | || | |||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
33989102 |
acccctctccaacaccttgtgtgtgatttgccaacatcttagccattttaagatcacatttcatgaagctctgccaagttggaaacatgtatacgttgtg |
33989201 |
T |
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| Q |
218 |
tgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataa |
269 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||| |||| |
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| T |
33989202 |
tgggaaactctttgcatttggagcatcatatttgaaaactacacatggataa |
33989253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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