View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_60 (Length: 316)
Name: NF3710_high_60
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 28386213 - 28385928
Alignment:
| Q |
20 |
caatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggccca |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28386213 |
caatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgactccgcattctcatgggctaatgacttggccca |
28386114 |
T |
|
| Q |
120 |
caagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttacttcatacagatgct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28386113 |
caagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattctcttcgaacaaacaatttacttcatacagatgct |
28386014 |
T |
|
| Q |
220 |
gatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagtaaaccaccacaggttct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28386013 |
gatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagtaaaccaccaaaggttct |
28385928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 12541561 - 12541314
Alignment:
| Q |
20 |
caatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggccca |
119 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||| |||| ||| |||||||| |||||||| ||||| || || | | |||||||| |||||||||||| | |
|
|
| T |
12541561 |
caatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcg |
12541462 |
T |
|
| Q |
120 |
caagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttacttcatacagatgct |
219 |
Q |
| |
|
||||| ||| | || ||| | || || |||||||| ||||| ||||||||||| || | | |||||| ||| ||||||||| |||||||| || || |
|
|
| T |
12541461 |
taagctacaagtacccaatttcacattcaatggatcctctctttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattct |
12541362 |
T |
|
| Q |
220 |
gatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
267 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
12541361 |
gattctgattcggattcaagttcgtatgtcgttccaaattttcctcat |
12541314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 13441076 - 13440829
Alignment:
| Q |
20 |
caatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggccca |
119 |
Q |
| |
|
||||||||||| ||| | | ||| ||||||| | ||||| ||||||| |||||||| || | || ||||||| | ||||||||||||||||||| || |
|
|
| T |
13441076 |
caatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactccgcatacccatgggctaatgacttggcgca |
13440977 |
T |
|
| Q |
120 |
caagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttacttcatacagatgct |
219 |
Q |
| |
|
|||||||| ||||| || || || || ||||||| ||| || ||| | ||||| || | | ||||| | | ||||||| ||||||||| | ||| || |
|
|
| T |
13440976 |
taagcttcagatcccaaacctcacattcaatggattgtcactttttaccgtctctctcgtggaatccctccaagcaaacaacttacttcattctgatact |
13440877 |
T |
|
| Q |
220 |
gatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
267 |
Q |
| |
|
|| |||||| ||||||||||| | ||| ||||||||| ||| |||| |
|
|
| T |
13440876 |
aattctgatttggattcaagttcctttgttgttccaaattttcctcat |
13440829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 3416917 - 3416953
Alignment:
| Q |
98 |
catgggctaatgacttggcccacaagcttcaaatccc |
134 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
3416917 |
catgggttaatgacttggcccagaagcttcaaatccc |
3416953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University