View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_62 (Length: 315)
Name: NF3710_high_62
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_62 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 16334749 - 16335057
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334749 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
16334848 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334849 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
16334948 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaatttattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334949 |
gcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaatttattct |
16335048 |
T |
|
| Q |
301 |
tcatctcac |
309 |
Q |
| |
|
|||| |||| |
|
|
| T |
16335049 |
tcatgtcac |
16335057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 16124902 - 16124620
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16124902 |
atcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
16124803 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
16124802 |
tctatgaaatagatccatctcatgtgagaaatcagattgggagttacgggcaagcctttgcaaagcatgagaagaatttgaagca--------------- |
16124718 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaatttatt |
298 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16124717 |
gcagaaatggaaagatgctctcaccgaagtctccaatttatctgggtgggactctaaaagttcaaggtaaataaaatgaattatccatctaatttatt |
16124620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 16127055 - 16126914
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16127055 |
atcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
16126956 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattggga |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16126955 |
tctatgaaatagatccatctcatgtgagatatcagattggga |
16126914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 36034281 - 36034018
Alignment:
| Q |
14 |
actatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
36034281 |
actatgcttcttcaaaatggtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatgggcagattgtgataccgattttctacgaaataga |
36034182 |
T |
|
| Q |
114 |
tccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaacttgcaaaaatggaaa |
213 |
Q |
| |
|
|||||| |||||||| |||| |||||||| ||| |||||||||||||||| || || | ||||||| |||||| |||||||| ||||| |||| |||| |
|
|
| T |
36034181 |
tccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaagttgcagaaatagaaa |
36034082 |
T |
|
| Q |
214 |
gatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaat |
277 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
36034081 |
gatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat |
36034018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 36017375 - 36017112
Alignment:
| Q |
14 |
actatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
113 |
Q |
| |
|
||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
36017375 |
actatgcttcttctaaatgatgcttgaatgaactcgtcaagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaataga |
36017276 |
T |
|
| Q |
114 |
tccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaacttgcaaaaatggaaa |
213 |
Q |
| |
|
|||||| |||||||| |||| |||||||| ||| |||||||||||||||| || || | ||||||| |||||| |||||||| ||||| |||| |||| |
|
|
| T |
36017275 |
tccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagaataagcaaaatttgaagcacaacaaagacaagttgcagaaatagaaa |
36017176 |
T |
|
| Q |
214 |
gatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaat |
277 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
36017175 |
gatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat |
36017112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 36025486 - 36025197
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||| || |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
36025486 |
atcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctgttt |
36025387 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| || || || | ||| |||| ||| |||| | |||||| ||| | |||||||| || |
|
|
| T |
36025386 |
tctatgaaatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaatt |
36025287 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| | ||||||||||| |||||| ||||| |
|
|
| T |
36025286 |
gcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattacaagtaaataaaataaattatacatct |
36025197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36004725 - 36004562
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||| || |||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
36004725 |
atcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgtaagaaagatcagggacagattgtgataccgattt |
36004626 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||| | ||| || || ||||||||||||||||| |
|
|
| T |
36004625 |
tctacgaaatagatccatcacatgtgaggaatcaaaatggaagttatgggcaagcctttgcaaa |
36004562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23480779 - 23480616
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||| | ||| |||||||||||| ||| |
|
|
| T |
23480779 |
atcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataaggaacacattgtgataccagttt |
23480680 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
| || ||||||||||||| |||||||| | |||| ||||| |||| |||||| |||||||| |
|
|
| T |
23480679 |
tttacaaaatagatccatcacatgtgaggaaccagaccgggagttacgagcaagcttttgcaaa |
23480616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23449289 - 23449063
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| ||| |||||||||||| ||| |
|
|
| T |
23449289 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgcaacagattgtgataccagttt |
23449190 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
| || | ||||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| || || | |||||| |||||| || ||||| || |
|
|
| T |
23449189 |
tttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataatgacaagtt |
23449090 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcaccga |
227 |
Q |
| |
|
| | |||||||||||| |||||||||| |
|
|
| T |
23449089 |
gaagaaatggaaagattctctcaccga |
23449063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23465422 - 23465199
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| | ||| |||||||||||| ||| |
|
|
| T |
23465422 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttt |
23465323 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
| || | ||||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| || || ||||||| |||||| || || || || |
|
|
| T |
23465322 |
tttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgaaatttgaagcacaataacgataagtt |
23465223 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcac |
224 |
Q |
| |
|
| | |||||||||| ||||||||| |
|
|
| T |
23465222 |
ggagaaatggaaagctgctctcac |
23465199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23501052 - 23500826
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatgga-caaattgtgataccaatt |
99 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| |||||| || ||||| || |||||||||||| || |
|
|
| T |
23501052 |
atcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaatat-atggagcagattgtgataccagtt |
23500954 |
T |
|
| Q |
100 |
ttctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaact |
199 |
Q |
| |
|
|| || | ||||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| || || |||||| |||||| || ||||| | |
|
|
| T |
23500953 |
ttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagt |
23500854 |
T |
|
| Q |
200 |
tgcaaaaatggaaagatgctctcaccga |
227 |
Q |
| |
|
|| | |||||||||||| |||||||||| |
|
|
| T |
23500853 |
tgaagaaatggaaagattctctcaccga |
23500826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23353919 - 23353693
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| ||| |||||||||||| ||| |
|
|
| T |
23353919 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagttt |
23353820 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaactt |
200 |
Q |
| |
|
| || | ||||||||||| |||||||| | |||| ||||| ||| ||||||||||| ||| || || |||||| |||||| || ||||| || |
|
|
| T |
23353819 |
tttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagatttgaagcacaataatgacaagtt |
23353720 |
T |
|
| Q |
201 |
gcaaaaatggaaagatgctctcaccga |
227 |
Q |
| |
|
| | |||||||||| |||||||||||| |
|
|
| T |
23353719 |
ggagaaatggaaagctgctctcaccga |
23353693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23441899 - 23441736
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| | ||| ||||||||||| ||| |
|
|
| T |
23441899 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttt |
23441800 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
| || | ||||||||||| |||||||| | |||| |||||| ||| ||||||||| ||||| |
|
|
| T |
23441799 |
tttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaa |
23441736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23474431 - 23474268
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| | ||| ||||||||||| ||| |
|
|
| T |
23474431 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttt |
23474332 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
| || | ||||||||||| |||||||| | |||| |||||| ||| ||||||||| ||||| |
|
|
| T |
23474331 |
tttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaa |
23474268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 36009758 - 36009631
Alignment:
| Q |
16 |
tatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatc |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||| |||||| | |||| ||| |
|
|
| T |
36009758 |
tatgcttcttcaaaatggtgcttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtgatacctgttttcttcggaataaatc |
36009659 |
T |
|
| Q |
116 |
catctcatgtgagatatcagattgggag |
143 |
Q |
| |
|
|||| |||| |||| |||| ||||||| |
|
|
| T |
36009658 |
catcggatgttagatttcagcttgggag |
36009631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 21087406 - 21087312
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgatacc |
95 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
21087406 |
atcttctcagaaaactacgcttcctcaaaatggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacc |
21087312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23406768 - 23406605
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| ||| | ||| ||||||||||| ||| |
|
|
| T |
23406768 |
atcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttt |
23406669 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
| || | ||||||||||| ||||||| | |||| ||||| ||| ||||||||||||||| |
|
|
| T |
23406668 |
tttacaacatagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
23406605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21088594 - 21088477
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| || | ||| ||||||||||| ||| |
|
|
| T |
21088594 |
atcttttcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttt |
21088495 |
T |
|
| Q |
101 |
tctatgaaatagatccat |
118 |
Q |
| |
|
| || |||||||||||| |
|
|
| T |
21088494 |
tttacaaaatagatccat |
21088477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 35766280 - 35766409
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatg |
106 |
Q |
| |
|
||||||||||||||||| || || ||||||||| |||| | || ||||| | ||||| ||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
35766280 |
tcagaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcatggaatgtaagaaagatcggggacaaattgtgatacctgtgttctata |
35766379 |
T |
|
| Q |
107 |
aaatagatccatctcatgtgagatatcaga |
136 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |
|
|
| T |
35766380 |
aaatagatccatcacatgtgagaaatcaga |
35766409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23435487 - 23435419
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaag |
69 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
23435487 |
atcttctcagaaaactatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaag |
23435419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 23456053 - 23455926
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||| || ||| | ||| || |||||||| |||| |
|
|
| T |
23456053 |
atcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatctcaaaaagattctagaatgcaagcaatatatggaacagatcgtgatacctattt |
23455954 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgag |
128 |
Q |
| |
|
| || | || |||||||| |||||||| |
|
|
| T |
23455953 |
tttacaacattgatccatcacatgtgag |
23455926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23388408 - 23388251
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| |||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
23388408 |
atcttctcagaaaattatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgttt |
23388309 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctt |
158 |
Q |
| |
|
| || | |||||||| || |||||||| | |||| |||||| |||| ||||||||| |
|
|
| T |
23388308 |
tttacaacatagatccctcacatgtgaggaagcagactgggagttacgagcaagcctt |
23388251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 12894720 - 12894986
Alignment:
| Q |
14 |
actatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||| |
|
|
| T |
12894720 |
actatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatggacaaattgtgatacctgttttttacgaaataga |
12894819 |
T |
|
| Q |
114 |
tccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcacaagaaagacaacttgcaaaaatggaaa |
213 |
Q |
| |
|
|||||| |||||||| |||| | ||||| ||| | |||||||||||||| | ||| | |||||| |||| ||||| | || |||||||||||| |
|
|
| T |
12894820 |
tccatcacatgtgaggaatcaaacagggaggtacagtcaagcctttgcaaaacacgagcaagatttgaagcacggcaaagatatgttacaaaaatggaaa |
12894919 |
T |
|
| Q |
214 |
gatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaa |
280 |
Q |
| |
|
|||||||||| |||| |||| ||| |||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
12894920 |
gatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaatgaa |
12894986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13596 - 13433
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || ||||||||| |||||||| |||||||||||| ||| | ||| ||||||||||| ||| |
|
|
| T |
13596 |
atcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttt |
13497 |
T |
|
| Q |
101 |
tctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
164 |
Q |
| |
|
| || | ||||||||| | ||||||| | |||| ||| || ||| ||||||||||||||| |
|
|
| T |
13496 |
tttacaacatagatccagcaaatgtgaggaagcagactggaagttaccagcaagcctttgcaaa |
13433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9744 - 9812
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaag |
69 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || ||||||||| |||||||| ||||||||| |
|
|
| T |
9744 |
atcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaag |
9812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3309 - 3380
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaagattctagaatgcaagaaa |
72 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||| || |||||||||||| |||||| |||||||| ||||| |
|
|
| T |
3309 |
atcttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaa |
3380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 7087038 - 7086996
Alignment:
| Q |
11 |
aaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
7087038 |
aaaactatgcttcttcaaaatggtgtttggatgagcttgtcaa |
7086996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 12178831 - 12178788
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgt |
50 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
12178831 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12178788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 12190526 - 12190483
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgt |
50 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
12190526 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12190483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 12423259 - 12423216
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgt |
50 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
12423259 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12423216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 12434954 - 12434911
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgt |
50 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
12434954 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12434911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 6097930 - 6097884
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatgagctcgtcaa |
53 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||| |||| |
|
|
| T |
6097930 |
tcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaa |
6097884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 5568723 - 5568760
Alignment:
| Q |
7 |
tcagaaaactatgcttcttcaaaatggtgtttgaatga |
44 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
5568723 |
tcagagaactatgcttcttcaacatggtgtttgaatga |
5568760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 167634 - 167678
Alignment:
| Q |
1 |
atcttatcagaaaactatgcttcttcaaaatggtgtttgaatgag |
45 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
167634 |
atcttctcagaaaactatgcttcctcataatggtgcttgaatgag |
167678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University