View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_68 (Length: 300)
Name: NF3710_high_68
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_68 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 971208 - 971443
Alignment:
| Q |
5 |
attatgaaaagataagggggcagaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatggaaaaagata |
104 |
Q |
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| T |
971208 |
attatgaaaagataaggggagagaggatctccttgtctaattccccttttaggtttaaacatagtagatggggatccatttataagaatggaaaaagaca |
971307 |
T |
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| Q |
105 |
cacttctgacacacaacattatagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactctatcatatgc |
204 |
Q |
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| T |
971308 |
cacttctgacacacagcattatagttttaacaattttaatagggaagcccatagtgagaagagtgctttctaggaaatcccattccactctatgatatgc |
971407 |
T |
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| Q |
205 |
tttttccatatcaagcttaattccaaccacgccaga |
240 |
Q |
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| T |
971408 |
tttttccatatcaagcttaattccaaccacaccaga |
971443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 43136247 - 43136452
Alignment:
| Q |
26 |
agaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatggaaaaagatacacttctgacacacaacatta |
125 |
Q |
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| T |
43136247 |
agagggtctccttgtctaattcctctcttaggtttaaaagtagtagaatgagatccattaattagaatagaaaaagagacacttctgacacaaagcacga |
43136346 |
T |
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| Q |
126 |
tagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactctatcatatgctttttccatatcaagcttaat |
225 |
Q |
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| T |
43136347 |
tagtattgacaagattaataggaaaacccatggtgaagagagttgattctaaaaaatcccactccactctgtcatatgccttttccagatcaagcttaat |
43136446 |
T |
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| Q |
226 |
tccaac |
231 |
Q |
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|||||| |
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| T |
43136447 |
tccaac |
43136452 |
T |
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