View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_81 (Length: 274)
Name: NF3710_high_81
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 3602832 - 3603078
Alignment:
| Q |
10 |
aagaatataaatctataatagtgttagcattaattacttacccacaatataataaaaatatggcttgtaatcatggaatttcatatttttgaaaatcaca |
109 |
Q |
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| T |
3602832 |
aagaatataaaactatattaatgttagcattaggaacctacccacaatataataaaaatatggcttgtaatcatggaatttcatgtttttgaaaatcaca |
3602931 |
T |
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| Q |
110 |
acaaatacaaagccaaggagcttccgcacaaacagcaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtatcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3602932 |
acaaatacaaagccaaggagcttccgcacaaacaacaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtaccg |
3603031 |
T |
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| Q |
210 |
tcgatagtaattgccataacaaggagaactaatacaaggacagcaat |
256 |
Q |
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| T |
3603032 |
tcgatagtaattgccataacaaggagaactaatacaaggacagcaat |
3603078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 14341638 - 14341870
Alignment:
| Q |
12 |
gaatataaatctataatagtgttagcattaattacttacccacaatataataaaaatatggcttgtaatcatggaatttcatatttttgaaaatcacaac |
111 |
Q |
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| T |
14341638 |
gaatataaatctataataatgttagcatta----cttacccacaatataataaaaatatggcttgtaatcatggaatttcatgtttttgaaaatcacaac |
14341733 |
T |
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| Q |
112 |
aaatacaaagccaaggagcttccgcacaaacagcaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtatcgtc |
211 |
Q |
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||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14341734 |
aaatacaaagccaaggagcttccaaacaaatagcacgatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtaccgtc |
14341833 |
T |
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| Q |
212 |
gatagtaattgccataacaaggagaactaatacaagg |
248 |
Q |
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| T |
14341834 |
gatagtaattgccataacaaggagaactaatacaagg |
14341870 |
T |
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