View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_84 (Length: 263)

Name: NF3710_high_84
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_84
NF3710_high_84
[»] chr2 (2 HSPs)
chr2 (1-249)||(2464532-2464781)
chr2 (102-172)||(10542092-10542162)
[»] scaffold1112 (1 HSPs)
scaffold1112 (83-159)||(1245-1321)
[»] chr1 (5 HSPs)
chr1 (108-172)||(40315893-40315957)
chr1 (102-169)||(15013533-15013600)
chr1 (105-161)||(28119774-28119830)
chr1 (105-171)||(38871187-38871253)
chr1 (100-152)||(21538961-21539013)
[»] chr5 (4 HSPs)
chr5 (52-143)||(2716377-2716468)
chr5 (56-150)||(18914350-18914445)
chr5 (123-172)||(1893793-1893842)
chr5 (100-153)||(18107857-18107910)
[»] chr4 (2 HSPs)
chr4 (52-173)||(10390453-10390575)
chr4 (102-171)||(52827261-52827330)
[»] chr3 (8 HSPs)
chr3 (52-133)||(12799721-12799803)
chr3 (102-172)||(50338411-50338481)
chr3 (82-171)||(35358462-35358551)
chr3 (124-153)||(18356355-18356384)
chr3 (46-171)||(34992583-34992708)
chr3 (92-153)||(40927054-40927115)
chr3 (105-153)||(29763728-29763776)
chr3 (105-153)||(31801754-31801802)
[»] chr6 (6 HSPs)
chr6 (106-169)||(33172509-33172572)
chr6 (53-153)||(26098572-26098673)
chr6 (110-158)||(26598833-26598882)
chr6 (102-170)||(5269302-5269370)
chr6 (102-150)||(18494303-18494351)
chr6 (101-153)||(29256470-29256522)
[»] chr8 (2 HSPs)
chr8 (105-153)||(3895403-3895451)
chr8 (105-153)||(25186796-25186844)
[»] chr7 (1 HSPs)
chr7 (63-147)||(24426782-24426866)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2464781 - 2464532
Alignment:
Q  1 cgagtcgatagcataaacataatagcaagtgact-aatgaatcttagagagtctctgataccatgttgaaactggggcatacctcattctcaaaaaatta 99  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||     
T  2464781 cgagtcaatagcagaaacataatagcaagtgactcaatgaatcttagagagtctctgataccatgttgaaattggggcatacctcattctcacaaaattg 2464682  T
Q  100 gtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttgaannnnnnncaataataaggaccagcag 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||       |||||||||||||||||||    
T  2464681 gtttgtaagatgaggaatgtcttctctttataaacttttatcaagagtcttatccatctgatgtgagacttgaatttttttcaataataaggaccagcag 2464582  T
Q  200 cctagattatagaattttccaatgaaattgcgtccatgaatagaaaaact 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2464581 cctagattatagaattttcaaatgaaattgcgtccatgaatagaaaaact 2464532  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 10542092 - 10542162
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttga 172  Q
    |||||||||||||| ||||| ||||||||||| | |||||||||||   ||| ||||||| || |||||||    
T  10542092 ttgtaagatgaggagtgtctcctctttataaactcttatcaagagttcaatctatctaatgtgggacttga 10542162  T

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Target: scaffold1112 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 1245 - 1321
Alignment:
Q  83 tcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatcta 159  Q
    ||||||| | ||||| ||||| |||| ||| || ||||||||||||||||| | ||||||||||||||||| |||||    
T  1245 tcattcttacaaaatcagtttttaaggtgatgagtgtcttctctttataaactcttatcaagagtcttatctatcta 1321  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 40315893 - 40315957
Alignment:
Q  108 gatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttga 172  Q
    ||||||| |||||||||||||||||| ||| |||||||||| | || |||| |||||||||||||    
T  40315893 gatgagggatgtcttctctttataaactttcatcaagagtcctttctatcttatatgagacttga 40315957  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 15013600 - 15013533
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagact 169  Q
    ||||||| |||| | ||||||||||||||||| | || ||||||||| |||| |||||||||||||||    
T  15013600 ttgtaaggtgagaagtgtcttctctttataaactgttctcaagagtcatatctatctaatatgagact 15013533  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 28119774 - 28119830
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaat 161  Q
    |||| |||| |||| || ||||||||||| | |||||||||||||||||||||||||    
T  28119774 taaggtgagaaatggctactctttataaactcttatcaagagtcttatccatctaat 28119830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 38871187 - 38871253
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttg 171  Q
    |||| |||||| || || ||||||||||| ||||||||||||||||||| |||| || || ||||||    
T  38871187 taaggtgaggagtgcctcctctttataaacttttatcaagagtcttatctatctgatgtgggacttg 38871253  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 21538961 - 21539013
Alignment:
Q  100 gtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttat 152  Q
    ||||||||| |||||| || || ||||||||||||| || |||||||||||||    
T  21538961 gtttgtaaggtgaggattgcctcctctttataaattcttctcaagagtcttat 21539013  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 2716468 - 2716377
Alignment:
Q  52 ctctgataccatgttgaaactggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaa 143  Q
    ||||||||||||||||||| |||||| || ||||| || | ||||  || || |||| |||||| ||||| ||||||||||| |||||||||    
T  2716468 ctctgataccatgttgaaattggggcctaactcatccttacaaaaccagcttataaggtgaggagtgtctcctctttataaacttttatcaa 2716377  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 18914350 - 18914445
Alignment:
Q  56 gataccatgttgaaact-ggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtctt 150  Q
    ||||||||||||||| | ||||| || |||||||| | ||||  || ||||||| |||||| ||||| || |||||||| |||| |||||||||||    
T  18914350 gataccatgttgaaatttggggcctaactcattcttacaaaaccagcttgtaaggtgaggattgtctcctttttataaacttttctcaagagtctt 18914445  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 1893842 - 1893793
Alignment:
Q  123 ctctttataaatttttatcaagagtcttatccatctaatatgagacttga 172  Q
    ||||||||||| | |||||||||||| |||| ||| ||||||||||||||    
T  1893842 ctctttataaactcttatcaagagtcgtatctatccaatatgagacttga 1893793  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 18107910 - 18107857
Alignment:
Q  100 gtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    |||| |||| |||||| || || ||||||||||||| |||||||||||||||||    
T  18107910 gtttataaggtgaggagtgcctcctctttataaattcttatcaagagtcttatc 18107857  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 10390453 - 10390575
Alignment:
Q  52 ctctgataccatgttgaaact-ggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtctt 150  Q
    ||||||||||||||||||| | ||||  || ||||| || | |||| | |||  |||| |||||||||||| ||||||||||| | |||||||||| |||    
T  10390453 ctctgataccatgttgaaatttggggtctaactcatccttacaaaactggttcataaggtgaggaatgtctcctctttataaactattatcaagagactt 10390552  T
Q  151 atccatctaatatgagacttgaa 173  Q
    ||| ||| ||| || ||||||||    
T  10390553 atctatccaatgtgggacttgaa 10390575  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 52827261 - 52827330
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttg 171  Q
    ||||||| |||||| || || ||||||||||| | |||||||||||| |||| ||| ||| |||||||||    
T  52827261 ttgtaaggtgaggagtgcctcctctttataaactcttatcaagagtcctatctatccaatgtgagacttg 52827330  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 12799803 - 12799721
Alignment:
Q  52 ctctgataccatgttgaaact-ggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaa 133  Q
    ||||||||||||||||||| | ||||| |  ||||| || | |||| ||||||||||| ||||||||| ||||||||||||||    
T  12799803 ctctgataccatgttgaaatttggggcttcactcatccttacaaaactagtttgtaaggtgaggaatgccttctctttataaa 12799721  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 50338411 - 50338481
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttga 172  Q
    ||||||| ||| || ||||| |||| |||||| | ||||||||||||||||| |||| |||||||||||||    
T  50338411 ttgtaaggtgaagattgtctcctctatataaactcttatcaagagtcttatctatctgatatgagacttga 50338481  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 35358462 - 35358551
Alignment:
Q  82 ctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagacttg 171  Q
    ||||| |||| |||||| | ||||||| |||||| ||||| || |||||| | |||| |||||||||||||| |||| || |||||||||    
T  35358462 ctcatcctcacaaaattggcttgtaaggtgaggattgtctcctttttatatacttttttcaagagtcttatctatctgatgtgagacttg 35358551  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 18356355 - 18356384
Alignment:
Q  124 tctttataaatttttatcaagagtcttatc 153  Q
    ||||||||||||||||||||||||||||||    
T  18356355 tctttataaatttttatcaagagtcttatc 18356384  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 34992708 - 34992583
Alignment:
Q  46 gagagtctctgataccatgttgaaactggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaaga 145  Q
    ||||| |||||||||||| || ||| |||||| || ||||| | || ||||   | |||| ||||||||| || || ||||||||||| | || ||||||    
T  34992708 gagagactctgataccatcttaaaattggggcctaactcatccgcacaaaaccggcttgtgagatgaggattgcctcctctttataaactcttctcaaga 34992609  T
Q  146 gtcttatccatctaatatgagacttg 171  Q
    |||||||| |||| || || ||||||    
T  34992608 gtcttatctatctgatgtgggacttg 34992583  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 40927115 - 40927054
Alignment:
Q  92 aaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    ||||| |||||  ||||||||||| ||||| |||| |||||| | |||||||||||||||||    
T  40927115 aaaaactagttcataagatgaggattgtctcctctatataaactcttatcaagagtcttatc 40927054  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 29763728 - 29763776
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    ||||||| ||| ||||| ||||||||||| | |||||||||||||||||    
T  29763728 taagatggggagtgtctcctctttataaactcttatcaagagtcttatc 29763776  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 31801802 - 31801754
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    ||||||||||||||||   |||||||||| | |||||||||||||||||    
T  31801802 taagatgaggaatgtcccttctttataaactattatcaagagtcttatc 31801754  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 33172572 - 33172509
Alignment:
Q  106 aagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagact 169  Q
    |||||| ||||||||| || |||||||| ||||||||||||||||||  || | ||||||||||    
T  33172572 aagatggggaatgtctcctatttataaacttttatcaagagtcttatgtatttgatatgagact 33172509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 26098673 - 26098572
Alignment:
Q  53 tctgataccatgttgaaact-ggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagtctta 151  Q
    |||||||||||||||||| | ||||| || |||||||| | ||||   |||  |||| |||||| ||||| ||||||||||| | |||||| ||||||||    
T  26098673 tctgataccatgttgaaatttggggcctaactcattcttacaaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtctta 26098574  T
Q  152 tc 153  Q
    ||    
T  26098573 tc 26098572  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 26598833 - 26598882
Alignment:
Q  110 tgaggaatgtcttctcttt-ataaatttttatcaagagtcttatccatct 158  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||| ||||    
T  26598833 tgaggaatgtcttctcttttataaattattatcaagagttttatctatct 26598882  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 5269302 - 5269370
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatccatctaatatgagactt 170  Q
    ||||||| |||||| || |||||||||||||| | || |||||||||||||| |||  || ||||||||    
T  5269302 ttgtaaggtgaggattgccttctctttataaactcttctcaagagtcttatctatccgatgtgagactt 5269370  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 18494303 - 18494351
Alignment:
Q  102 ttgtaagatgaggaatgtcttctctttataaatttttatcaagagtctt 150  Q
    |||||||||||||| || || ||||||||||||| || |||||||||||    
T  18494303 ttgtaagatgaggattgcctcctctttataaattattctcaagagtctt 18494351  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 29256470 - 29256522
Alignment:
Q  101 tttgtaagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    |||||||| |||||| |||||  ||||||||||||||| | ||||||||||||    
T  29256470 tttgtaaggtgaggattgtctcatctttataaatttttctgaagagtcttatc 29256522  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 3895451 - 3895403
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    |||| |||||| || ||||||| |||||||| |||||||||||||||||    
T  3895451 taaggtgaggattgccttctctatataaattcttatcaagagtcttatc 3895403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 25186844 - 25186796
Alignment:
Q  105 taagatgaggaatgtcttctctttataaatttttatcaagagtcttatc 153  Q
    |||||||| || ||||| |||| |||||| |||||||||||||||||||    
T  25186844 taagatgatgattgtctcctctatataaacttttatcaagagtcttatc 25186796  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 24426866 - 24426782
Alignment:
Q  63 tgttgaaactggggcatacctcattctcaaaaaattagtttgtaagatgaggaatgtcttctctttataaatttttatcaagagt 147  Q
    |||||||| |||||  || |||| ||| | |||| | |||| |||| |||||||| ||||||||||||||| | |||||||||||    
T  24426866 tgttgaaattggggtctaactcactcttataaaactggtttataaggtgaggaatatcttctctttataaactcttatcaagagt 24426782  T

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