View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_87 (Length: 260)

Name: NF3710_high_87
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_87
NF3710_high_87
[»] chr6 (5 HSPs)
chr6 (17-150)||(795307-795440)
chr6 (17-150)||(800062-800195)
chr6 (17-150)||(8269633-8269766)
chr6 (17-150)||(8274348-8274481)
chr6 (153-191)||(18819786-18819824)
[»] chr5 (2 HSPs)
chr5 (17-150)||(19940577-19940710)
chr5 (17-150)||(19945331-19945464)
[»] chr7 (6 HSPs)
chr7 (17-150)||(6688641-6688774)
chr7 (17-150)||(6693381-6693514)
chr7 (152-191)||(43264777-43264816)
chr7 (152-190)||(39780249-39780287)
chr7 (208-245)||(39780322-39780358)
chr7 (151-191)||(38663018-38663058)
[»] chr8 (2 HSPs)
chr8 (17-151)||(26199351-26199484)
chr8 (153-191)||(45483397-45483435)
[»] scaffold0592 (1 HSPs)
scaffold0592 (151-191)||(3632-3672)
[»] chr3 (5 HSPs)
chr3 (151-191)||(25069261-25069301)
chr3 (153-191)||(26906022-26906060)
chr3 (153-191)||(36614979-36615017)
chr3 (208-245)||(25069321-25069358)
chr3 (151-191)||(2125279-2125319)
[»] chr1 (2 HSPs)
chr1 (151-191)||(1014067-1014107)
chr1 (208-245)||(1014121-1014158)
[»] chr2 (2 HSPs)
chr2 (155-191)||(4076685-4076721)
chr2 (208-245)||(4076629-4076666)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 795307 - 795440
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  795307 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 795406  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  795407 gtgcatgtgggtccttacacaatgttcaccaaca 795440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 800062 - 800195
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  800062 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 800161  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  800162 gtgcatgtgggtccttacacaatgttcaccaaca 800195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 8269766 - 8269633
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8269766 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 8269667  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  8269666 gtgcatgtgggtccttacacaatgttcaccaaca 8269633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 8274481 - 8274348
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8274481 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 8274382  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  8274381 gtgcatgtgggtccttacacaatgttcaccaaca 8274348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 18819824 - 18819786
Alignment:
Q  153 tgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18819824 tgaaacatggtgtggcatatgccacaccagtttctaatc 18819786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 19940710 - 19940577
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19940710 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 19940611  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  19940610 gtgcatgtgggtccttacacaatgttcaccaaca 19940577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 19945464 - 19945331
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19945464 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccac 19945365  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  19945364 gtgcatgtgggtccttacacaatgttcaccaaca 19945331  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 6688774 - 6688641
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  6688774 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgcttcagtaaattgctttggctggttatcccac 6688675  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||| ||||||||||||||||    
T  6688674 gtgcatgtgggtccttaaacaatgttcaccaaca 6688641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 6693514 - 6693381
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||    
T  6693514 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtgacaatttgtttcaacaaattgttttggctggttatcccac 6693415  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaaca 150  Q
    ||||||||||||||||||||||||||||||||||    
T  6693414 gtgcatgtgggtccttacacaatgttcaccaaca 6693381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 43264777 - 43264816
Alignment:
Q  152 gtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43264777 gtgaaacatggtgtggcatatgccacaccagtttctaatc 43264816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 39780249 - 39780287
Alignment:
Q  152 gtgaaacatggtgtggcatatgccacaccagtttctaat 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  39780249 gtgaaacaaggtgtggcatatgccacaccagtttctaat 39780287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 39780322 - 39780358
Alignment:
Q  208 atatgcataattcataaaaggcctggcacggggagaag 245  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39780322 atatgcataattc-taaaaggcctggcacggggagaag 39780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 38663018 - 38663058
Alignment:
Q  151 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||  ||||||||||| ||||||||    
T  38663018 tgtgaaacatggtgtggcagctgccacaccagattctaatc 38663058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 26199484 - 26199351
Alignment:
Q  17 cataggcttactatttgaaagaaaaatgcaacctataataaatgcatgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccac 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26199484 cataggcttactatttgaaagaaaaatgcaacctataatatatgcatgagactttgtgtgacaatttgcttcagcaaattgctttggctggttat-ccac 26199386  T
Q  117 gtgcatgtgggtccttacacaatgttcaccaacat 151  Q
    |||||||||||||||||||||||||||||||||||    
T  26199385 gtgcatgtgggtccttacacaatgttcaccaacat 26199351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 45483397 - 45483435
Alignment:
Q  153 tgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45483397 tgaaacatggtgtggcatatgccacaccagtttctaatc 45483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 3632 - 3672
Alignment:
Q  151 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3632 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 3672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 25069261 - 25069301
Alignment:
Q  151 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25069261 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 25069301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 26906060 - 26906022
Alignment:
Q  153 tgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26906060 tgaaacatggtgtggcatatgccacaccagtttctaatc 26906022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 36614979 - 36615017
Alignment:
Q  153 tgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36614979 tgaaacatggtgtggcatatgccacaccagtttctaatc 36615017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 25069321 - 25069358
Alignment:
Q  208 atatgcataattcataaaaggcctggcacggggagaag 245  Q
    |||| |||||||||||||||||||||||||||||||||    
T  25069321 atatccataattcataaaaggcctggcacggggagaag 25069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 2125279 - 2125319
Alignment:
Q  151 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||  ||||||||||| ||||||||    
T  2125279 tgtgaaacatggtgtggcagctgccacaccagattctaatc 2125319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 1014067 - 1014107
Alignment:
Q  151 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1014067 tgtgaaacatggtgtggcatatgccacaccagtttctaatc 1014107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 1014121 - 1014158
Alignment:
Q  208 atatgcataattcataaaaggcctggcacggggagaag 245  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  1014121 atatccataattcataaaaggcctggcatggggagaag 1014158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 4076721 - 4076685
Alignment:
Q  155 aaacatggtgtggcatatgccacaccagtttctaatc 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  4076721 aaacatggtgtggcatatgccacaccagtttctaatc 4076685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 4076666 - 4076629
Alignment:
Q  208 atatgcataattcataaaaggcctggcacggggagaag 245  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4076666 atatccataattcataaaaggcctggcacggggagaag 4076629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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