View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_high_95 (Length: 249)
Name: NF3710_high_95
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_95 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11850399 - 11850630
Alignment:
| Q |
1 |
aacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaacggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850399 |
aacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaacggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggat |
11850498 |
T |
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| Q |
101 |
caggggattgaataagaaacttagtacacagcaaaaccatgaggaaattgagcttcctgaaattgaagagcaccaaccttgggatgagttttctacgtcg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850499 |
caggggattgaataagaaacttagtgcacagcaaaaccatgaggaaattgagcttcctgaaattgaagagcaccaaccttgggatgagttttctacgtcg |
11850598 |
T |
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| Q |
201 |
agttcattgcaaattgttgacagtcaaacata |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11850599 |
agttcattgcaaattgttgacagtcaaacata |
11850630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11845670 - 11845901
Alignment:
| Q |
1 |
aacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaacggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11845670 |
aacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaatggaagaaaacgaccaactatgaaagaagttacattaaaattggaagggat |
11845769 |
T |
|
| Q |
101 |
caggggattgaataagaaacttagtacacagcaaaaccatgaggaaattgagcttcctgaaattgaagagcaccaaccttgggatgagttttctacgtcg |
200 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11845770 |
caggggattgaataggaaacttagtgcacagcaaaaccatgaggaaattgagcttcctgaaattgaagagcaccgaccttgggatgagttttctacgtcg |
11845869 |
T |
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| Q |
201 |
agttcattgcaaattgttgacagtcaaacata |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11845870 |
agttcattgcaaattgttgacagtcaaacata |
11845901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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