View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_high_96 (Length: 249)

Name: NF3710_high_96
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_high_96
NF3710_high_96
[»] chr1 (15 HSPs)
chr1 (147-239)||(39079277-39079369)
chr1 (24-89)||(23734248-23734313)
chr1 (24-89)||(23741440-23741505)
chr1 (24-89)||(4621238-4621303)
chr1 (24-89)||(7766728-7766793)
chr1 (24-89)||(8254753-8254818)
chr1 (24-89)||(27454865-27454930)
chr1 (24-89)||(45331622-45331687)
chr1 (25-89)||(24122155-24122219)
chr1 (27-89)||(7578543-7578605)
chr1 (24-85)||(6776211-6776272)
chr1 (24-89)||(27159216-27159281)
chr1 (3-63)||(30677285-30677346)
chr1 (24-89)||(32729675-32729740)
chr1 (24-89)||(36155889-36155954)
[»] chr6 (12 HSPs)
chr6 (147-239)||(2322951-2323043)
chr6 (24-89)||(21148512-21148577)
chr6 (24-90)||(9239106-9239172)
chr6 (27-89)||(28672201-28672263)
chr6 (24-89)||(3222637-3222702)
chr6 (24-89)||(11449002-11449067)
chr6 (24-89)||(34147477-34147542)
chr6 (24-89)||(34160093-34160158)
chr6 (25-89)||(654147-654211)
chr6 (24-89)||(9208383-9208448)
chr6 (24-89)||(15360099-15360164)
chr6 (54-90)||(8051576-8051612)
[»] chr7 (23 HSPs)
chr7 (3-89)||(27704115-27704201)
chr7 (24-89)||(3851892-3851957)
chr7 (32-89)||(21217834-21217891)
chr7 (24-89)||(27312287-27312352)
chr7 (32-90)||(19421374-19421432)
chr7 (24-89)||(7275412-7275477)
chr7 (24-89)||(10091323-10091387)
chr7 (32-89)||(18044250-18044307)
chr7 (24-89)||(22120023-22120088)
chr7 (24-89)||(40542911-40542976)
chr7 (27-89)||(31712903-31712965)
chr7 (32-90)||(32849734-32849792)
chr7 (24-89)||(654706-654771)
chr7 (24-89)||(2751406-2751471)
chr7 (24-89)||(7175863-7175928)
chr7 (24-89)||(11997984-11998049)
chr7 (24-89)||(17196951-17197016)
chr7 (24-89)||(21835286-21835351)
chr7 (24-89)||(29861805-29861870)
chr7 (24-89)||(31197725-31197790)
chr7 (24-89)||(42913514-42913579)
chr7 (26-90)||(22638425-22638489)
chr7 (9-89)||(28089939-28090019)
[»] chr5 (19 HSPs)
chr5 (24-89)||(22392819-22392884)
chr5 (24-89)||(7085627-7085692)
chr5 (24-89)||(21236363-21236428)
chr5 (9-89)||(19145413-19145493)
chr5 (24-89)||(8484662-8484727)
chr5 (24-89)||(18207338-18207403)
chr5 (24-89)||(19456212-19456277)
chr5 (24-89)||(22693066-22693131)
chr5 (24-89)||(27498732-27498797)
chr5 (12-89)||(41568870-41568947)
chr5 (25-89)||(37495186-37495250)
chr5 (26-89)||(41351105-41351168)
chr5 (24-89)||(11926502-11926567)
chr5 (24-85)||(13659250-13659311)
chr5 (24-89)||(15641107-15641171)
chr5 (24-89)||(30485959-30486024)
chr5 (24-89)||(38630980-38631045)
chr5 (38-90)||(22648167-22648219)
chr5 (37-89)||(28614487-28614539)
[»] scaffold0328 (1 HSPs)
scaffold0328 (24-89)||(13048-13113)
[»] chr8 (12 HSPs)
chr8 (9-89)||(2166816-2166896)
chr8 (24-89)||(2639412-2639477)
chr8 (24-89)||(4718780-4718845)
chr8 (9-90)||(7557951-7558032)
chr8 (24-89)||(21603365-21603430)
chr8 (24-89)||(39349391-39349456)
chr8 (24-89)||(42643119-42643184)
chr8 (25-89)||(8765527-8765591)
chr8 (27-89)||(25248485-25248546)
chr8 (32-90)||(28193617-28193675)
chr8 (24-89)||(2618321-2618386)
chr8 (24-89)||(34237656-34237721)
[»] scaffold0102 (1 HSPs)
scaffold0102 (24-89)||(39223-39288)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-89)||(161940-162005)
[»] chr4 (13 HSPs)
chr4 (24-89)||(19660533-19660598)
chr4 (24-89)||(5609203-5609268)
chr4 (24-89)||(34844759-34844824)
chr4 (24-89)||(40058853-40058918)
chr4 (24-89)||(46714524-46714589)
chr4 (24-89)||(52983750-52983815)
chr4 (25-89)||(44343646-44343710)
chr4 (39-89)||(18875518-18875568)
chr4 (24-89)||(9978510-9978575)
chr4 (24-89)||(20566481-20566546)
chr4 (24-89)||(27528796-27528861)
chr4 (24-89)||(32986328-32986393)
chr4 (32-89)||(36131511-36131568)
[»] chr3 (24 HSPs)
chr3 (24-89)||(15566501-15566566)
chr3 (24-89)||(1692964-1693029)
chr3 (24-89)||(8097280-8097345)
chr3 (24-89)||(8456151-8456216)
chr3 (24-89)||(8958036-8958101)
chr3 (24-89)||(24165716-24165781)
chr3 (24-89)||(26174244-26174309)
chr3 (24-89)||(34492576-34492641)
chr3 (24-89)||(45272417-45272482)
chr3 (24-89)||(53848435-53848500)
chr3 (26-89)||(54475814-54475877)
chr3 (27-89)||(24407395-24407457)
chr3 (32-89)||(4048089-4048146)
chr3 (24-89)||(7195938-7196003)
chr3 (24-89)||(10190743-10190808)
chr3 (24-85)||(30257755-30257816)
chr3 (24-89)||(40133450-40133515)
chr3 (24-89)||(45529756-45529820)
chr3 (32-89)||(49258263-49258320)
chr3 (32-89)||(50731238-50731295)
chr3 (32-89)||(50781559-50781616)
chr3 (32-89)||(52821637-52821694)
chr3 (24-89)||(53233912-53233976)
chr3 (24-89)||(53424178-53424243)
[»] chr2 (11 HSPs)
chr2 (24-89)||(15038090-15038155)
chr2 (3-89)||(19054134-19054222)
chr2 (24-89)||(35171931-35171996)
chr2 (24-89)||(2140487-2140552)
chr2 (24-89)||(11941211-11941276)
chr2 (32-89)||(28669012-28669069)
chr2 (24-89)||(44946054-44946119)
chr2 (25-89)||(27269345-27269409)
chr2 (24-89)||(24196133-24196198)
chr2 (24-89)||(25293290-25293355)
chr2 (24-89)||(38784182-38784247)
[»] scaffold0576 (1 HSPs)
scaffold0576 (24-89)||(5083-5148)
[»] scaffold0217 (1 HSPs)
scaffold0217 (24-89)||(7310-7375)
[»] scaffold0051 (1 HSPs)
scaffold0051 (24-89)||(52872-52937)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 39079277 - 39079369
Alignment:
Q  147 aaaagaattggtgcaagaatgtatccaagaaatttataactgccatgctttttgtttttgttcgtgtgtcgtggtgaccttgagtagtctgtg 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39079277 aaaagaattggtgcaagaatatatccaagaaatttataactgccatggtttttgtttttgttcgtgtgtcgtggtgaccttgagtagtctgtg 39079369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 23734248 - 23734313
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||| ||||||| |||||| |||||    
T  23734248 ccccgcaagtgggcggtgaaattggtcccctcagattagtcgattcttgaatcggataccaagttt 23734313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 23741440 - 23741505
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||| ||||||| |||||| |||||    
T  23741440 ccccgcaagtgggcggtgaaattggtcccctcagattagtcgattcttgaatcggataccaagttt 23741505  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 4621303 - 4621238
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  4621303 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 4621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 7766793 - 7766728
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||||    
T  7766793 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaatcggatatcgagttt 7766728  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8254818 - 8254753
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||   |||||| |||| ||||||| ||||||||||||    
T  8254818 ccccgcaagtgggcggtgggattgatccccttgaattagtcgattcttgaatcggataccgagttt 8254753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 27454930 - 27454865
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||||||||||| |||| ||||||| ||||||| |||| ||| ||| |||||| |||||    
T  27454930 ccccgcatgtgggcggtgggattggtcccctcggattagtcgattcttggatcggatacctagttt 27454865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 45331687 - 45331622
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| ||| |||||||||||||| | |||| ||||||| ||||||||||||    
T  45331687 ccccgcaagtggacggtgggattaatcccctcagattaatcgattcttgaatcggataccgagttt 45331622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 24122155 - 24122219
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  24122155 cccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 24122219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 7578543 - 7578605
Alignment:
Q  27 cgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||| ||||| |||| | ||||| |||||||||||||||| ||| ||||||||||||    
T  7578543 cgcaagtgggtggtgggattggttccctcggattagttgatttttggatcggataccgagttt 7578605  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 6776211 - 6776272
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccga 85  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||| ||| |||  |||||||    
T  6776211 ccccgcaagtaggcggtggaattgatccactcagattagtcgattattgtatcgaataccga 6776272  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 27159216 - 27159281
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| |||| ||||||||||||||| ||| |||| ||| |||| |||||||    
T  27159216 ccccgcaagtggacggtgggattggtcccctcagattagtcgatctttggatcggatatcgagttt 27159281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 30677285 - 30677346
Alignment:
Q  3 ttgcattggctttaaatgaaacccc-gcatgtgggcggtggaattgatcccctcagattagt 63  Q
    |||| |||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||    
T  30677285 ttgctttggctttaaatgggacccccgcaagtgggcggtgggattggtcccctcagattagt 30677346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 32729675 - 32729740
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||  ||||||| | | |||| ||| ||||||||||||    
T  32729675 ccccgcaagtgggcggtgggattgatccccttggattagtcggtctttggatcggataccgagttt 32729740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 36155954 - 36155889
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||| ||| |||||| |||| ||| ||| ||||||||||||    
T  36155954 ccccgcaggtgggcggtgggattggtcccttcaaattagtcgattcttggatcggataccgagttt 36155889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 2322951 - 2323043
Alignment:
Q  147 aaaagaattggtgcaagaatgtatccaagaaatttataactgccatgctttttgtttttgttcgtgtgtcgtggtgaccttgagtagtctgtg 239  Q
    ||||||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2322951 aaaagaattggtgcaaatatatatccaagaaatttataactgccatgatttttgtttttgttcgtgtgtcgtggtgaccttgagtagtctgtg 2323043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 21148577 - 21148512
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||||||| ||||||||||||    
T  21148577 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaatcggataccgagttt 21148512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 9239106 - 9239172
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| |||||||||||||    
T  9239106 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttta 9239172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 28672201 - 28672263
Alignment:
Q  27 cgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||||||||||||||||    
T  28672201 cgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagttt 28672263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 3222702 - 3222637
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  3222702 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 3222637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11449002 - 11449067
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||||    
T  11449002 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaatcggatatcgagttt 11449067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 34147477 - 34147542
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  34147477 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 34147542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 34160093 - 34160158
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  34160093 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 34160158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 654211 - 654147
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  654211 cccgcaagtgggcggtgggattggtcccctcggattagtcgattattggatcggataccgagttt 654147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 9208383 - 9208448
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| || ||||||| |||| |||| ||| |||| |||||||||||    
T  9208383 ccccgcaagtgggcggtgggattggtctcctcagaatagtcgattcttggatcaaataccgagttt 9208448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 15360164 - 15360099
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||||  |||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  15360164 ccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 15360099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 8051612 - 8051576
Alignment:
Q  54 tcagattagttgatttttgaatcagataccgagttta 90  Q
    |||||||||||| || |||||||||||||||||||||    
T  8051612 tcagattagttggttcttgaatcagataccgagttta 8051576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 27704115 - 27704201
Alignment:
Q  3 ttgcattggctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||||| | ||||||| ||||| ||||  |||||||||||||||||||| |||| ||||||||||||||||||||    
T  27704115 ttgctttggctttaaatggacccccgcaagtgggtggtgtgattgatcccctcagattagtcgattcttgaatcagataccgagttt 27704201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 3851892 - 3851957
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||| ||||||||||||    
T  3851892 ccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttggatcggataccgagttt 3851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 21217891 - 21217834
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||    
T  21217891 gtgggcggtgggattgatcccctcggattagttgattcttggatcggataccgagttt 21217834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 27312287 - 27312352
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||||||||||| |||| ||| ||| ||||||||||||    
T  27312287 ccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagttt 27312352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 19421374 - 19421432
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    ||||||||||| |||| || |||| ||||||| |||| |||||||||||||||||||||    
T  19421374 gtgggcggtgggattggtctcctcggattagtcgattcttgaatcagataccgagttta 19421432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 7275412 - 7275477
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  7275412 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 7275477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 10091323 - 10091387
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||| ||||||||||||    
T  10091323 ccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttg-atccgataccgagttt 10091387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 18044250 - 18044307
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||| |||||||||| ||||||||||||||| |||| ||| ||| ||||||||||||    
T  18044250 gtgggtggtggaattggtcccctcagattagtcgattcttggatcggataccgagttt 18044307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 22120023 - 22120088
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  22120023 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 22120088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 40542976 - 40542911
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  40542976 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 40542911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 31712965 - 31712903
Alignment:
Q  27 cgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  31712965 cgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 31712903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 32849734 - 32849792
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    |||||| |||| |||| ||||||||||||||| |||| ||| ||| |||||||||||||    
T  32849734 gtgggcagtgggattggtcccctcagattagtcgattcttggatcggataccgagttta 32849792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 654771 - 654706
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| | || ||| ||| ||||||||||||    
T  654771 ccccgcaagtgggcggtgggattggtcccctcggattagtcggttcttggatcggataccgagttt 654706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 2751406 - 2751471
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||||  |||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  2751406 ccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 2751471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 7175928 - 7175863
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||| ||||||    
T  7175928 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggatactgagttt 7175863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11997984 - 11998049
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||||||  |||||| |||| ||| ||| ||||||||||||    
T  11997984 ccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttggatcggataccgagttt 11998049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 17197016 - 17196951
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||||||  |||||| |||| ||| ||| ||||||||||||    
T  17197016 ccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttggatcggataccgagttt 17196951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 21835286 - 21835351
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| |||| |||||||    
T  21835286 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggatatcgagttt 21835351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 29861805 - 29861870
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| ||||||||||||  |||||| |||| ||  ||| ||||||||||||    
T  29861805 ccccgcaagtgggcggtgggattgatcccctcgaattagtcgattcttagatcggataccgagttt 29861870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 31197725 - 31197790
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| |||| ||||||||||||||| |||| ||| ||| |||| |||||||    
T  31197725 ccccgcaagtggtcggtgggattggtcccctcagattagtcgattcttggatcggatatcgagttt 31197790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 42913579 - 42913514
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| |||| ||||||| |||||||||||| ||  ||| ||||||||||||    
T  42913579 ccccgcaagtggacggtgggattggtcccctcggattagttgattcttagatcggataccgagttt 42913514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 22638425 - 22638489
Alignment:
Q  26 ccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    ||||| ||||||||||| ||||||| ||||  |||||| |||| ||| ||| |||||||||||||    
T  22638425 ccgcaagtgggcggtgggattgatctcctcgaattagtcgattcttggatcggataccgagttta 22638489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 28089939 - 28090019
Alignment:
Q  9 tggctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||||   ||||||| ||||||| ||  |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  28089939 tggctttaaatgggcccccgcaagtgggcgatgagattggtcccctcggattagtcgattcttggatcggataccgagttt 28090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 22392819 - 22392884
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||    
T  22392819 ccccgcaagtgggcggtggaattggtcccctcagattagtcgatttttggatcggataccgagttt 22392884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 7085692 - 7085627
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||||||| ||||||||||||    
T  7085692 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaatcggataccgagttt 7085627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 21236428 - 21236363
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||  ||||||||||||||| |||| ||||||| ||||||||||||    
T  21236428 ccccgcaagtgggcggtgggattagtcccctcagattagtcgattcttgaatcggataccgagttt 21236363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 19145493 - 19145413
Alignment:
Q  9 tggctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||||   ||||||| ||||||||||| |||| ||||||| ||||||||| || ||| ||| ||||||||||||    
T  19145493 tggctttaaatggtcccccgcaagtgggcggtgggattggtcccctcggattagttggttcttggatcggataccgagttt 19145413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8484727 - 8484662
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  8484727 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 8484662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 18207338 - 18207403
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  18207338 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 18207403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 19456277 - 19456212
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  19456277 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 19456212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 22693066 - 22693131
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  22693066 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 22693131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 27498797 - 27498732
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  27498797 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 27498732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 41568947 - 41568870
Alignment:
Q  12 ctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||| |||||||||  |||| ||||| |||| |||||| ||||||||||||| ||  |||||||| |||||||    
T  41568947 ctttaaatggaaccccgcaaatgggtggtgggattggtcccctaagattagttgattattcgatcagatatcgagttt 41568870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37495186 - 37495250
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  37495186 cccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 37495250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 41351168 - 41351105
Alignment:
Q  26 ccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  41351168 ccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 41351105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 11926567 - 11926502
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||| ||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  11926567 ccccgcaagtgggtggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 11926502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 13659311 - 13659250
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccga 85  Q
    ||||||| ||||||||||| |||||||||||| ||||| | |||| ||| ||| ||||||||    
T  13659311 ccccgcaagtgggcggtgggattgatcccctcggattaatcgattcttggatcggataccga 13659250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 15641171 - 15641107
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  15641171 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg-atcggataccgagttt 15641107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 30485959 - 30486024
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| |||||||  ||| ||| ||| ||||||||||||    
T  30485959 ccccgcaagtgggcggtgggattggtcccctcggattagtcaattcttggatcggataccgagttt 30486024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 38631045 - 38630980
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||| | |||| ||| ||| ||||||||||||    
T  38631045 ccccgcaagtgggcggtgggattggtcccctcggattaatcgattcttggatcggataccgagttt 38630980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 22648167 - 22648219
Alignment:
Q  38 ggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    ||||| |||||||||||||||||||| | | |||| ||| |||||||||||||    
T  22648167 ggtgggattgatcccctcagattagtcggtctttggatcggataccgagttta 22648219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 28614539 - 28614487
Alignment:
Q  37 cggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||||  |||||| |||||||| ||| ||||||||||||    
T  28614539 cggtgggattgatcccctcgaattagtcgatttttggatcggataccgagttt 28614487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 13113 - 13048
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  13113 ccccgcaagtggacggtgggattgatcccctcagattagttgattcttggatcggataccgagttt 13048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 2166816 - 2166896
Alignment:
Q  9 tggctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| | |||||||| ||||||||||| |||| ||||||||||||||| |||||||  ||  ||||||||||||    
T  2166816 tggctttaaataagaccccgcaagtgggcggtgggattggtcccctcagattagtcgattttttgattggataccgagttt 2166896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 2639477 - 2639412
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  2639477 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 2639412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 4718780 - 4718845
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  4718780 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 4718845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 7558032 - 7557951
Alignment:
Q  9 tggctttaaatgaaaccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    |||||||||| | | ||||||| |||| |||||| |||| |||||||  |||||| |||||||| ||| |||||||||||||    
T  7558032 tggctttaaacggacccccgcaagtggacggtgggattggtcccctcgaattagtcgatttttgcatcggataccgagttta 7557951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 21603365 - 21603430
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  21603365 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 21603430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 39349391 - 39349456
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||| |||||| |||||    
T  39349391 ccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttggatcggataccaagttt 39349456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 42643184 - 42643119
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||||||  ||||||||||| ||| ||| ||||||||||||    
T  42643184 ccccgcaagtgggcggtgggattggtcccctcgcattagttgattcttggatcggataccgagttt 42643119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 8765591 - 8765527
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  8765591 cccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 8765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 25248485 - 25248546
Alignment:
Q  27 cgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||| |||| ||||||| ||||||| |||||||| ||| ||||||||||||    
T  25248485 cgcaagtgggcggtgggattggtcccctcggattagtcgatttttg-atcggataccgagttt 25248546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 28193617 - 28193675
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttta 90  Q
    ||||||||||| |||| ||||||| ||||||| |||| ||| ||| |||||||||||||    
T  28193617 gtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttta 28193675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 2618321 - 2618386
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||| ||||||||    
T  2618321 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggattccgagttt 2618386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 34237721 - 34237656
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||| ||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  34237721 ccccgcaagtgagcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 34237656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 39223 - 39288
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||||||||||||||||    
T  39223 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagttt 39288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 161940 - 162005
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||||||||||||||||    
T  161940 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagttt 162005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 19660598 - 19660533
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||| ||||||||||||    
T  19660598 ccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttggatcggataccgagttt 19660533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 5609268 - 5609203
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| |||||||||||| ||||||| |||| ||| ||| ||||||||||||    
T  5609268 ccccgcaagtggacggtgggattgatcccctcggattagtcgattcttggatcggataccgagttt 5609203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 34844824 - 34844759
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  34844824 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 34844759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 40058918 - 40058853
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  40058918 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 40058853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 46714524 - 46714589
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| |||||||  ||| ||||||| ||||||||||||    
T  46714524 ccccgcaagtgggcggtgggattggtcccctcggattagtcaattcttgaatcggataccgagttt 46714589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 52983750 - 52983815
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  52983750 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 52983815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 44343646 - 44343710
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||| |||||||  |||||| |||| ||||||| ||||||||||||    
T  44343646 cccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttgaatcggataccgagttt 44343710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 18875568 - 18875518
Alignment:
Q  39 gtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| |||||||||||| |||||||  ||||||| ||||||||||||||||    
T  18875568 gtgggattgatcccctcggattagtcaatttttggatcagataccgagttt 18875518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 9978575 - 9978510
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||| || |||||||||||| ||  ||| ||||||||||||    
T  9978575 ccccgcaagtgggcggtgggattggtcccatcggattagttgattcttagatcggataccgagttt 9978510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 20566481 - 20566546
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||| ||| |||| ||||||||||||||| |||| ||| ||| |||| |||||||    
T  20566481 ccccgcaagtgggcgctgggattggtcccctcagattagtcgattcttggatcggatatcgagttt 20566546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 27528861 - 27528796
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||  |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  27528861 ccccgcaagtgggcggtgagattggtcccctcggattagtcgattcttggatcggataccgagttt 27528796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 32986328 - 32986393
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| || |||| |||| ||| ||| ||||||||||||    
T  32986328 ccccgcaagtgggcggtgggattggtcccctcggaatagtcgattcttggatcggataccgagttt 32986393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 36131568 - 36131511
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||| ||||||| |||| ||  ||||||||||||||||    
T  36131568 gtgggcggtgggattggtcccctcggattagtcgattattagatcagataccgagttt 36131511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 15566566 - 15566501
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||||||||||| |||| ||| ||| ||||||||||||    
T  15566566 ccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagttt 15566501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 1692964 - 1693029
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||   |||||||||||||| |||| ||||||| ||||||||||||    
T  1692964 ccccgcaagtgggcggtgggatttgccccctcagattagtcgattcttgaatcggataccgagttt 1693029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8097345 - 8097280
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  8097345 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 8097280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8456216 - 8456151
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||||| |||| |||| ||||||| ||||||| |||| ||||||| ||||||||||||    
T  8456216 ccccgcaagtgggcagtgggattggtcccctcggattagtcgattcttgaatcggataccgagttt 8456151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8958101 - 8958036
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||| | |||| ||| ||||||||||||||||    
T  8958101 ccccgcaagtgggcggtgggattggtcccctctgattaatcgattcttggatcagataccgagttt 8958036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 24165781 - 24165716
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  24165781 ccccgcaagtgggcggtgggattgttcccctcggattagtcgattcttggatcggataccgagttt 24165716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26174244 - 26174309
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  26174244 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 26174309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 34492641 - 34492576
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||  ||||||||||||||| ||| ||| ||||||||||||    
T  34492641 ccccgcaagtgggcggtgggattggtccattcagattagttgattcttggatctgataccgagttt 34492576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 45272482 - 45272417
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| |||||||||| | ||| ||| ||||||||||||    
T  45272482 ccccgcaagtgggcggtgggattggtcccctcggattagttgactcttggatcggataccgagttt 45272417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 53848500 - 53848435
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  53848500 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 53848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 54475814 - 54475877
Alignment:
Q  26 ccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||| ||||||||||| |||| ||||||  ||||||| |||| ||| ||||||||||||||||    
T  54475814 ccgcaagtgggcggtgggattggtccccttggattagtcgattcttggatcagataccgagttt 54475877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 24407395 - 24407457
Alignment:
Q  27 cgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  24407395 cgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 24407457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 4048089 - 4048146
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| |||||| |||| ||||||| |||||||||||| ||| ||| ||||||||||||    
T  4048089 gtggacggtgggattggtcccctcggattagttgattcttggatcggataccgagttt 4048146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 7195938 - 7196003
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||| |||| |||| ||||||||||||||| |||| ||  || |||||||||||||    
T  7195938 ccccacatgtgggcagtgggattggtcccctcagattagtcgattctttgattagataccgagttt 7196003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 10190808 - 10190743
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  10190808 ccccgcaagtggacggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 10190743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 30257755 - 30257816
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccga 85  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||    
T  30257755 ccccgcaagtgggcggtggcattggtcccctcggattagtcgattcttggatcggataccga 30257816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 40133515 - 40133450
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| |||||||  |||||| |||| ||| ||| ||||||||||||    
T  40133515 ccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttggatcggataccgagttt 40133450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 45529820 - 45529756
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  45529820 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg-atcggataccgagttt 45529756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 49258320 - 49258263
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  49258320 gtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 49258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 50731295 - 50731238
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||||||||||| |||  ||| ||| ||||||||||||    
T  50731295 gtgggcggtgggattggtcccctcagattagtcgatccttggatcggataccgagttt 50731238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 50781559 - 50781616
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||||||||||| |||  ||| ||| ||||||||||||    
T  50781559 gtgggcggtgggattggtcccctcagattagtcgatccttggatcggataccgagttt 50781616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 52821694 - 52821637
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  52821694 gtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 52821637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 53233976 - 53233912
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  53233976 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg-atcggataccgagttt 53233912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 53424243 - 53424178
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||| ||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  53424243 ccccgcaagtgagcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 53424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 15038090 - 15038155
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||||||||||| |||| ||| ||| ||||||||||||    
T  15038090 ccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagttt 15038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 19054134 - 19054222
Alignment:
Q  3 ttgcattggctttaaatgaaacccc--gcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||| ||||||||||||| ||||||  ||| ||||||||||| |||| ||| ||| ||||||| |||| ||| ||||||||||||||||    
T  19054134 ttgctttggctttaaatggaaccccccgcaagtgggcggtgggattggtccgctcggattagtcgattcttggatcagataccgagttt 19054222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 35171931 - 35171996
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||||||| ||||||||||||    
T  35171931 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaatcggataccgagttt 35171996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 2140552 - 2140487
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  2140552 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattattggatcggataccgagttt 2140487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 11941276 - 11941211
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  11941276 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 11941211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 28669012 - 28669069
Alignment:
Q  32 gtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||||||| |||| ||||||| ||||||| |||||||| ||| ||||||||||||    
T  28669012 gtgggcggtgggattggtcccctcggattagtcgatttttggatcggataccgagttt 28669069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 44946119 - 44946054
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  44946119 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 44946054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 27269409 - 27269345
Alignment:
Q  25 cccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||  ||||||||||||    
T  27269409 cccgcaagtgggcggtgggattgatcccctcggattagtcgattcttggataggataccgagttt 27269345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 24196133 - 24196198
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||||||  ||  ||||||||||||    
T  24196133 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattttttgattggataccgagttt 24196198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 25293290 - 25293355
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||| ||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  25293290 ccccgcaagtgggcgatgggattggtcccctcggattagtcgattcttggatcggataccgagttt 25293355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 38784247 - 38784182
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| |||| |||||  ||||||||| ||||||||||||||| ||  |||| |||||||||||    
T  38784247 ccccgcaagtggacggtgagattgatcccttcagattagttgattcttagatcaaataccgagttt 38784182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 5148 - 5083
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    |||||||  |||||||||| |||| ||||||| ||||||| |||| ||| ||| ||||||||||||    
T  5148 ccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 5083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 7375 - 7310
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||| ||| ||| |||||| |||||    
T  7375 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccaagttt 7310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 52937 - 52872
Alignment:
Q  24 ccccgcatgtgggcggtggaattgatcccctcagattagttgatttttgaatcagataccgagttt 89  Q
    ||||||| ||||||||| | |||| ||| ||| ||||||| |||| ||||||| ||||||||||||    
T  52937 ccccgcaggtgggcggtaggattggtcctctcggattagtcgattcttgaatcggataccgagttt 52872  T

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